Analysis of interatomic Contacts of Structural Units in PDB entry:
2MQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MQS entry

There are 24 chains in PDB entry 2MQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 316GLY 511
B
 GLY 0PRO 1
B
 GLY 3PRO 4
B
 GLY 6PRO 7
B
 GLY 9LEU 22
B
 GLY 24PRO 25
B
 GLY 27PRO 28
B
 GLY 30PRO 31
B
 GLY 33PRO 34
C
 GLY 100PRO 101
C
 GLY 103PRO 104
C
 GLY 106PRO 107
C
 GLY 109LEU 122
C
 GLY 124PRO 125
C
 GLY 127PRO 128
C
 GLY 130PRO 131
C
 GLY 133PRO 134
D
 GLY 200PRO 201
D
 GLY 203PRO 204
D
 GLY 206PRO 207
D
 GLY 209LEU 222
D
 GLY 224PRO 225
D
 GLY 227PRO 228
D
 GLY 230PRO 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 2MQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
317 321Right-handed 310
Helix 2
2
A
357 361Right-handed alpha
Helix 3
3
A
403 407Right-handed alpha
Helix 4
4
A
454 456Right-handed 310
Helix 5
5
A
501 505Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2MQS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 329first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
340 345anti-parallel
Strand 4
A
348 349anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 329first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
340 345anti-parallel
Strand 4
A
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
379 383anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
394 395anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
379 383anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
401 402anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
434 439anti-parallel
Strand 4
A
444 445anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
434 439anti-parallel
Strand 4
A
451 452anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
474 479anti-parallel
Strand 3
A
482 487anti-parallel
Strand 4
A
492 493anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
474 479anti-parallel
Strand 3
A
482 487anti-parallel
Strand 4
A
499 500anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il