Analysis of interatomic Contacts of Structural Units in PDB entry:
2MSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MSE entry

There are 4 chains in PDB entry 2MSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 201ASN 398
C
 LEU 399ASN 596
B
 MET 1CYS 185
D
 GLY 808LEU 880
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2MSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
201 299Right-handed alpha
Helix 2
2
A
299 365Right-handed alpha
Helix 3
3
A
365 398Right-handed alpha
Helix 4
4
C
400 420Right-handed alpha
Helix 5
5
C
420 516Right-handed alpha
Helix 6
6
C
517 563Right-handed alpha
Helix 7
7
C
563 595Right-handed alpha
Helix 8
8
B
15 25Right-handed alpha
Helix 9
9
B
65 74Right-handed alpha
Helix 10
10
B
86 105Right-handed alpha
Helix 11
11
B
126 138Right-handed alpha
Helix 12
12
B
151 172Right-handed alpha
Helix 13
13
D
829 840Right-handed alpha
Helix 14
14
D
867 871Right-handed 310
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There are 3 sheets in PDB entry 2MSE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 46first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
2 10parallel
Strand 4
B
77 83parallel
Strand 5
B
111 116parallel
Strand 6
B
141 143parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
809 814first strand
Strand 2
D
818 823anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
857 860first strand
Strand 2
D
848 854anti-parallel
Strand 3
D
876 879anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il