Analysis of interatomic Contacts of Structural Units in PDB entry:
2MYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MYS entry

There are 46 chains in PDB entry 2MYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4ARG 18
A
 SER 20ASN 29
A
 PRO 31ALA 34
A
 SER 36VAL 48
A
 GLY 50SER 54
A
 GLU 56GLY 58
A
 VAL 60VAL 62
A
 THR 64PRO 83
A
 TYR 85ASP 86
A
 ILE 88LEU 106
A
 GLU 108TYR 129
A
 TRP 131PRO 137
A
 VAL 139THR 189
A
 ARG 191ALA 235
A
 THR 237GLY 247
A
 PHE 249GLU 271
A
 SER 273ASN 294
A
 PRO 297GLU 347
A
 THR 349TYR 352
A
 LEU 354PHE 366
A
 GLN 368GLN 368
A
 GLN 370ASP 384
A
 ALA 386THR 414
A
 GLY 416ALA 430
A
 ALA 432GLU 435
A
 MET 437GLU 485
A
 LEU 487TYR 503
A
 GLU 506GLU 527
A
 PRO 529PHE 550
A
 ASN 552ASN 552
A
 LEU 554GLU 597
A
 ASN 599ASN 599
A
 ASP 601GLN 612
A
 SER 614VAL 616
A
 THR 618ASN 658
A
 LEU 660THR 680
A
 THR 682THR 763
A
 VAL 765PHE 767
A
 ALA 769ASP 781
A
 LEU 783VAL 826
A
 HIS 828MET 832
A
 LEU 834PHE 836
A
 ILE 838ILE 838
A
 PRO 840LYS 843
B
 PHE 19ALA 163
C
 ALA 5VAL 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2MYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 17Right-handed alpha
Helix 2
2
A
25 28Right-handed alpha
Helix 3
3
A
74 76Right-handed 310
Helix 4
4
A
91 93Right-handed 310
Helix 5
5
A
100 108Right-handed alpha
Helix 6
6
A
155 169Right-handed alpha
Helix 7
7
A
185 200Right-handed alpha
Helix 8
8
A
218 233Right-handed alpha
Helix 9
9
A
273 275Right-handed 310
Helix 10
10
A
286 293Right-handed alpha
Helix 11
11
A
298 303Right-handed alpha
Helix 12
12
A
309 311Right-handed 310
Helix 13
13
A
313 315Right-handed 310
Helix 14
14
A
327 340Right-handed alpha
Helix 15
15
A
346 355Right-handed 310
Helix 16
16
A
357 363Right-handed alpha
Helix 17
17
A
383 390Right-handed 310
Helix 18
18
A
394 402Right-handed alpha
Helix 19
19
A
419 448Right-handed alpha
Helix 20
20
A
475 502Right-handed alpha
Helix 21
21
A
516 526Right-handed 310
Helix 22
22
A
532 541Right-handed alpha
Helix 23
23
A
555 558Right-handed alpha
Helix 24
24
A
605 611Right-handed alpha
Helix 25
25
A
619 623Right-handed alpha
Helix 26
26
A
650 665Right-handed alpha
Helix 27
27
A
688 698Right-handed alpha
Helix 28
28
A
700 707Right-handed alpha
Helix 29
29
A
717 727Right-handed alpha
Helix 30
30
A
742 749Right-handed alpha
Helix 31
31
A
771 825Right-handed alpha
Helix 32
32
A
830 836Right-handed 310
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There are 2 sheets in PDB entry 2MYS. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
668 675parallel
Strand 4
A
173 179parallel
Strand 5
A
457 465parallel
Strand 6
A
250 254anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 582first strand
Strand 2
A
587 590anti-parallel
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