Analysis of interatomic Contacts of Structural Units in PDB entry:
2N5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2N5T entry

There are 2 chains in PDB entry 2N5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 573
B
 MET 1THR 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 2N5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 65Right-handed alpha
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
82 97Right-handed alpha
Helix 4
4
A
99 117Right-handed alpha
Helix 5
5
A
120 143Right-handed alpha
Helix 6
6
A
164 170Right-handed alpha
Helix 7
7
A
188 198Right-handed alpha
Helix 8
8
A
232 254Right-handed alpha
Helix 9
9
A
278 287Right-handed alpha
Helix 10
10
A
297 302Right-handed alpha
Helix 11
11
A
309 324Right-handed alpha
Helix 12
12
A
342 346Right-handed 310
Helix 13
13
A
352 356Right-handed 310
Helix 14
14
A
359 364Right-handed alpha
Helix 15
15
A
366 381Right-handed alpha
Helix 16
16
A
395 416Right-handed alpha
Helix 17
17
A
432 438Right-handed alpha
Helix 18
18
A
438 444Right-handed alpha
Helix 19
19
A
452 461Right-handed alpha
Helix 20
20
A
467 474Right-handed 310
Helix 21
21
A
478 495Right-handed alpha
Helix 22
22
A
511 518Right-handed alpha
Helix 23
23
A
526 528Right-handed 310
Helix 24
24
A
529 539Right-handed alpha
Helix 25
25
A
541 555Right-handed alpha
Helix 26
26
A
557 573Right-handed alpha
Helix 27
27
B
32 65Right-handed alpha
Helix 28
28
B
66 81Right-handed alpha
Helix 29
29
B
82 97Right-handed alpha
Helix 30
30
B
99 117Right-handed alpha
Helix 31
31
B
120 143Right-handed alpha
Helix 32
32
B
164 170Right-handed alpha
Helix 33
33
B
188 198Right-handed alpha
Helix 34
34
B
232 254Right-handed alpha
Helix 35
35
B
278 287Right-handed alpha
Helix 36
36
B
297 302Right-handed alpha
Helix 37
37
B
309 324Right-handed alpha
Helix 38
38
B
342 346Right-handed 310
Helix 39
39
B
352 356Right-handed 310
Helix 40
40
B
359 364Right-handed alpha
Helix 41
41
B
366 381Right-handed alpha
Helix 42
42
B
395 416Right-handed alpha
Helix 43
43
B
432 438Right-handed alpha
Helix 44
44
B
438 444Right-handed alpha
Helix 45
45
B
452 461Right-handed alpha
Helix 46
46
B
467 474Right-handed 310
Helix 47
47
B
478 495Right-handed alpha
Helix 48
48
B
511 518Right-handed alpha
Helix 49
49
B
526 528Right-handed 310
Helix 50
50
B
529 539Right-handed alpha
Helix 51
51
B
541 555Right-handed alpha
Helix 52
52
B
557 573Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2N5T. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
176 181parallel
Strand 3
A
156 160parallel
Strand 4
A
12 18parallel
Strand 5
A
216 220anti-parallel
Strand 6
A
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
292 296parallel
Strand 3
A
329 332parallel
Strand 4
A
386 390parallel
Strand 5
A
425 430parallel
Strand 6
A
448 451parallel
Strand 7
A
498 501parallel
Strand 8
A
522 525parallel
Strand 9
A
270 275parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
176 181parallel
Strand 3
B
156 160parallel
Strand 4
B
12 18parallel
Strand 5
B
216 220anti-parallel
Strand 6
B
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
292 296parallel
Strand 3
B
329 332parallel
Strand 4
B
386 390parallel
Strand 5
B
425 430parallel
Strand 6
B
448 451parallel
Strand 7
B
498 501parallel
Strand 8
B
522 525parallel
Strand 9
B
270 275parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il