Analysis of interatomic Contacts of Structural Units in PDB entry:
2N8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2N8R entry

There are 25 chains in PDB entry 2N8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 100GLY 263
B
 GLY 1PRO 2
B
 GLY 4PRO 5
B
 GLY 7PRO 8
B
 GLY 10PRO 11
B
 GLY 13PRO 26
B
 GLY 28PRO 29
B
 GLY 31PRO 32
B
 GLY 34PRO 35
C
 GLY 37PRO 38
C
 GLY 40PRO 41
C
 GLY 43PRO 44
C
 GLY 46PRO 47
C
 GLY 49PRO 62
C
 GLY 64PRO 65
C
 GLY 67PRO 68
C
 GLY 70PRO 71
D
 GLY 73PRO 74
D
 GLY 76PRO 77
D
 GLY 79PRO 80
D
 GLY 82PRO 83
D
 GLY 85PRO 98
D
 GLY 100PRO 101
D
 GLY 103PRO 104
D
 GLY 106PRO 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2N8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
126 143Right-handed alpha
Helix 2
2
A
212 224Right-handed alpha
Helix 3
3
A
244 248Right-handed 310
Helix 4
4
A
251 260Right-handed alpha
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There are 2 sheets in PDB entry 2N8R. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
113 118parallel
Strand 3
A
159 164parallel
Strand 4
A
195 198parallel
Strand 5
A
182 183anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
210 211parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il