Analysis of interatomic Contacts of Structural Units in PDB entry:
2NLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NLI entry

There are 2 chains in PDB entry 2NLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7TYR 374
B
 GLU 7TYR 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2NLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 31Right-handed alpha
Helix 2
2
A
34 43Right-handed alpha
Helix 3
3
A
48 57Right-handed alpha
Helix 4
4
A
96 100Right-handed 310
Helix 5
5
A
103 116Right-handed alpha
Helix 6
6
A
128 137Right-handed alpha
Helix 7
7
A
150 164Right-handed alpha
Helix 8
8
A
195 203Right-handed alpha
Helix 9
9
A
205 209Right-handed 310
Helix 10
10
A
223 234Right-handed alpha
Helix 11
11
A
245 255Right-handed alpha
Helix 12
12
A
275 288Right-handed alpha
Helix 13
13
A
301 311Right-handed alpha
Helix 14
14
A
319 353Right-handed alpha
Helix 15
15
A
356 362Right-handed alpha
Helix 16
16
B
22 31Right-handed alpha
Helix 17
17
B
34 43Right-handed alpha
Helix 18
18
B
48 57Right-handed alpha
Helix 19
19
B
96 100Right-handed 310
Helix 20
20
B
103 116Right-handed alpha
Helix 21
21
B
128 137Right-handed alpha
Helix 22
22
B
150 164Right-handed alpha
Helix 23
23
B
223 234Right-handed alpha
Helix 24
24
B
245 255Right-handed alpha
Helix 25
25
B
275 288Right-handed alpha
Helix 26
26
B
301 311Right-handed alpha
Helix 27
27
B
319 352Right-handed alpha
Helix 28
28
B
356 362Right-handed alpha
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There are 6 sheets in PDB entry 2NLI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
365 367anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
83 85anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
315 318parallel
Strand 3
A
293 295parallel
Strand 4
A
259 262parallel
Strand 5
A
238 243parallel
Strand 6
A
169 172parallel
Strand 7
A
141 145parallel
Strand 8
A
119 121parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
365 367anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
83 85anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
315 318parallel
Strand 3
B
293 295parallel
Strand 4
B
259 262parallel
Strand 5
B
238 243parallel
Strand 6
B
169 172parallel
Strand 7
B
141 145parallel
Strand 8
B
119 121parallel
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