Analysis of interatomic Contacts of Structural Units in PDB entry:
2NLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NLY entry

There is 1 chain in PDB entry 2NLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 31PRO 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2NLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 53Right-handed alpha
Helix 2
2
A
68 79Right-handed alpha
Helix 3
3
A
109 124Right-handed alpha
Helix 4
4
A
137 140Right-handed 310
Helix 5
5
A
141 155Right-handed alpha
Helix 6
6
A
169 177Right-handed alpha
Helix 7
7
A
194 211Right-handed alpha
Helix 8
8
A
224 233Right-handed alpha
Helix 9
9
A
235 242Right-handed alpha
Helix 10
10
A
248 253Right-handed 310
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There are 2 sheets in PDB entry 2NLY. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
158 161parallel
Strand 3
A
129 134parallel
Strand 4
A
82 89parallel
Strand 5
A
58 62parallel
Strand 6
A
32 41parallel
Strand 7
A
216 220parallel
Strand 8
A
186 187parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
158 161parallel
Strand 3
A
129 134parallel
Strand 4
A
82 89parallel
Strand 5
A
58 62parallel
Strand 6
A
32 41parallel
Strand 7
A
244 246parallel
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