Analysis of interatomic Contacts of Structural Units in PDB entry:
2NMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NMT entry

There is 1 chain in PDB entry 2NMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 34LEU 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2NMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 37Right-handed 310
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
65 67Right-handed 310
Helix 4
4
A
89 102Right-handed alpha
Helix 5
5
A
117 123Right-handed alpha
Helix 6
6
A
131 133Right-handed 310
Helix 7
7
A
158 160Right-handed 310
Helix 8
8
A
175 177Right-handed 310
Helix 9
9
A
183 197Right-handed alpha
Helix 10
10
A
226 232Right-handed alpha
Helix 11
11
A
243 249Right-handed alpha
Helix 12
12
A
266 282Right-handed 310
Helix 13
13
A
292 298Right-handed alpha
Helix 14
14
A
358 360Right-handed 310
Helix 15
15
A
367 390Right-handed alpha
Helix 16
16
A
404 411Right-handed alpha
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There are 5 sheets in PDB entry 2NMT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
148 158anti-parallel
Strand 4
A
161 169anti-parallel
Strand 5
A
201 206parallel
Strand 6
A
419 425anti-parallel
Strand 7
A
215 218anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
334 336anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
285 287anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
395 398anti-parallel
Strand 3
A
347 350parallel
Strand 4
A
325 331anti-parallel
Strand 5
A
311 316anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
353 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il