Analysis of interatomic Contacts of Structural Units in PDB entry:
2NOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NOM entry

There are 2 chains in PDB entry 2NOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ILE 332
B
 MET 1VAL 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2NOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
28 44Right-handed alpha
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
73 79Right-handed alpha
Helix 5
5
A
87 109Right-handed alpha
Helix 6
6
A
142 156Right-handed alpha
Helix 7
7
A
158 160Right-handed 310
Helix 8
8
A
161 175Right-handed alpha
Helix 9
9
A
187 202Right-handed alpha
Helix 10
10
A
209 213Right-handed 310
Helix 11
11
A
214 218Right-handed 310
Helix 12
12
A
234 251Right-handed alpha
Helix 13
13
A
268 273Right-handed alpha
Helix 14
14
A
275 280Right-handed alpha
Helix 15
15
A
283 287Right-handed 310
Helix 16
16
A
310 326Right-handed alpha
Helix 17
17
B
4 17Right-handed alpha
Helix 18
18
B
53 59Right-handed alpha
Helix 19
19
B
94 98Right-handed 310
Helix 20
20
B
142 158Right-handed alpha
Helix 21
21
B
161 175Right-handed alpha
Helix 22
22
B
187 202Right-handed alpha
Helix 23
23
B
209 213Right-handed 310
Helix 24
24
B
234 251Right-handed alpha
Helix 25
25
B
269 273Right-handed alpha
Helix 26
26
B
275 285Right-handed alpha
Helix 27
27
B
310 328Right-handed alpha
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There are 4 sheets in PDB entry 2NOM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
134 139parallel
Strand 4
A
124 128anti-parallel
Strand 5
A
113 117anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
294 295parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
67 71anti-parallel
Strand 3
B
135 139parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
267 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il