Analysis of interatomic Contacts of Structural Units in PDB entry:
2NOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2NOV entry

There are 4 chains in PDB entry 2NOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 29	LEU 482
B	ALA 29	LEU 482
C	ALA 29	LEU 482
D	ALA 29	LEU 482

There are 72 helices in PDB entry 2NOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	38	51	Right-handed alpha
Helix 2	2	A	62	73	Right-handed alpha
Helix 3	3	A	81	88	Right-handed alpha
Helix 4	4	A	124	129	Right-handed alpha
Helix 5	5	A	160	166	Right-handed alpha
Helix 6	6	A	182	196	Right-handed alpha
Helix 7	7	A	200	205	Right-handed alpha
Helix 8	8	A	221	232	Right-handed alpha
Helix 9	9	A	264	272	Right-handed alpha
Helix 10	10	A	273	278	Right-handed alpha
Helix 11	11	A	310	318	Right-handed alpha
Helix 12	12	A	341	384	Right-handed alpha
Helix 13	13	A	384	393	Right-handed alpha
Helix 14	14	A	397	403	Right-handed alpha
Helix 15	15	A	412	421	Right-handed alpha
Helix 16	16	A	423	428	Right-handed 310
Helix 17	17	A	429	455	Right-handed alpha
Helix 18	18	A	457	475	Right-handed alpha
Helix 19	19	B	38	51	Right-handed alpha
Helix 20	20	B	62	73	Right-handed alpha
Helix 21	21	B	81	89	Right-handed alpha
Helix 22	22	B	115	118	Right-handed 310
Helix 23	23	B	126	132	Right-handed alpha
Helix 24	24	B	160	166	Right-handed alpha
Helix 25	25	B	182	196	Right-handed alpha
Helix 26	26	B	200	205	Right-handed alpha
Helix 27	27	B	221	231	Right-handed alpha
Helix 28	28	B	267	274	Right-handed alpha
Helix 29	29	B	311	318	Right-handed alpha
Helix 30	30	B	341	384	Right-handed alpha
Helix 31	31	B	384	394	Right-handed alpha
Helix 32	32	B	398	403	Right-handed alpha
Helix 33	33	B	412	421	Right-handed alpha
Helix 34	34	B	423	427	Right-handed 310
Helix 35	35	B	428	455	Right-handed alpha
Helix 36	36	B	455	475	Right-handed alpha
Helix 37	37	C	43	51	Right-handed alpha
Helix 38	38	C	62	73	Right-handed alpha
Helix 39	39	C	77	89	Right-handed alpha
Helix 40	40	C	124	129	Right-handed alpha
Helix 41	41	C	133	137	Right-handed 310
Helix 42	42	C	160	166	Right-handed alpha
Helix 43	43	C	182	196	Right-handed alpha
Helix 44	44	C	200	205	Right-handed alpha
Helix 45	45	C	221	232	Right-handed alpha
Helix 46	46	C	266	271	Right-handed alpha
Helix 47	47	C	309	319	Right-handed alpha
Helix 48	48	C	341	384	Right-handed alpha
Helix 49	49	C	384	394	Right-handed alpha
Helix 50	50	C	397	404	Right-handed alpha
Helix 51	51	C	412	421	Right-handed alpha
Helix 52	52	C	423	427	Right-handed 310
Helix 53	53	C	428	455	Right-handed alpha
Helix 54	54	C	457	475	Right-handed alpha
Helix 55	55	D	44	51	Right-handed alpha
Helix 56	56	D	62	71	Right-handed alpha
Helix 57	57	D	78	88	Right-handed alpha
Helix 58	58	D	124	132	Right-handed alpha
Helix 59	59	D	160	165	Right-handed alpha
Helix 60	60	D	182	196	Right-handed alpha
Helix 61	61	D	200	205	Right-handed alpha
Helix 62	62	D	222	231	Right-handed alpha
Helix 63	63	D	264	274	Right-handed alpha
Helix 64	64	D	310	314	Right-handed 310
Helix 65	65	D	342	384	Right-handed alpha
Helix 66	66	D	384	394	Right-handed alpha
Helix 67	67	D	397	402	Right-handed alpha
Helix 68	68	D	412	421	Right-handed alpha
Helix 69	69	D	423	428	Right-handed 310
Helix 70	70	D	429	434	Right-handed alpha
Helix 71	71	D	434	455	Right-handed alpha
Helix 72	72	D	458	474	Right-handed alpha

There are 25 sheets in PDB entry 2NOV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	120	123	anti-parallel
Strand 3	A	99	102	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	150	152	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	177	178	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	238	239	anti-parallel
Strand 3	A	322	323	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	A	326	328	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	252	256	anti-parallel
Strand 3	A	298	299	anti-parallel
Strand 4	A	288	289	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	333	first strand
Strand 2	A	336	339	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	120	123	anti-parallel
Strand 3	B	99	102	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	150	152	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	177	178	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	238	239	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	235	first strand
Strand 2	B	326	328	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	254	258	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	333	first strand
Strand 2	B	336	339	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	120	123	anti-parallel
Strand 3	C	99	102	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	150	152	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	238	239	anti-parallel
Strand 3	C	322	323	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	235	first strand
Strand 2	C	326	328	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	246	first strand
Strand 2	C	252	258	anti-parallel
Strand 3	C	298	301	anti-parallel
Strand 4	C	286	287	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	332	first strand
Strand 2	C	337	339	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	120	123	anti-parallel
Strand 3	D	99	102	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	150	152	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	235	239	anti-parallel
Strand 3	D	323	326	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	298	299	anti-parallel
Strand 3	D	288	289	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	333	first strand
Strand 2	D	336	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2NOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
2NOV