Analysis of interatomic Contacts of Structural Units in PDB entry:
2NRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NRJ entry

There is 1 chain in PDB entry 2NRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2THR 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2NRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
18 46Right-handed alpha
Helix 3
3
A
61 83Right-handed alpha
Helix 4
4
A
83 116Right-handed alpha
Helix 5
5
A
117 174Right-handed alpha
Helix 6
6
A
177 189Right-handed alpha
Helix 7
7
A
190 197Right-handed 310
Helix 8
8
A
203 207Right-handed 310
Helix 9
9
A
227 240Right-handed alpha
Helix 10
10
A
243 298Right-handed alpha
Helix 11
11
A
306 308Right-handed 310
Helix 12
12
A
309 336Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2NRJ.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 224first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
339 340parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il