Analysis of interatomic Contacts of Structural Units in PDB entry:
2NTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NTY entry

There are 4 chains in PDB entry 2NTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10LEU 363
B
 ALA 9LEU 364
C
 SER 4GLN 179
D
 ARG 5GLN 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2NTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
35 53Right-handed alpha
Helix 3
3
A
62 78Right-handed alpha
Helix 4
4
A
79 82Right-handed 310
Helix 5
5
A
107 130Right-handed alpha
Helix 6
6
A
144 149Right-handed alpha
Helix 7
7
A
155 159Right-handed 310
Helix 8
8
A
174 203Right-handed alpha
Helix 9
9
A
207 213Right-handed alpha
Helix 10
10
A
217 222Right-handed alpha
Helix 11
11
A
222 230Right-handed alpha
Helix 12
12
A
236 243Right-handed alpha
Helix 13
13
A
248 267Right-handed alpha
Helix 14
14
A
288 306Right-handed alpha
Helix 15
15
A
312 322Right-handed alpha
Helix 16
16
A
324 361Right-handed alpha
Helix 17
17
B
9 24Right-handed alpha
Helix 18
18
B
35 53Right-handed alpha
Helix 19
19
B
62 78Right-handed alpha
Helix 20
20
B
79 82Right-handed 310
Helix 21
21
B
107 112Right-handed alpha
Helix 22
22
B
112 130Right-handed alpha
Helix 23
23
B
144 149Right-handed alpha
Helix 24
24
B
172 203Right-handed alpha
Helix 25
25
B
207 213Right-handed alpha
Helix 26
26
B
217 223Right-handed alpha
Helix 27
27
B
223 230Right-handed alpha
Helix 28
28
B
236 243Right-handed alpha
Helix 29
29
B
248 269Right-handed alpha
Helix 30
30
B
287 306Right-handed alpha
Helix 31
31
B
312 322Right-handed alpha
Helix 32
32
B
324 362Right-handed alpha
Helix 33
33
C
18 29Right-handed alpha
Helix 34
34
C
89 99Right-handed alpha
Helix 35
35
C
99 108Right-handed alpha
Helix 36
36
C
119 123Right-handed 310
Helix 37
37
C
125 132Right-handed alpha
Helix 38
38
C
139 150Right-handed alpha
Helix 39
39
C
165 178Right-handed alpha
Helix 40
40
D
18 29Right-handed alpha
Helix 41
41
D
67 71Right-handed 310
Helix 42
42
D
89 99Right-handed alpha
Helix 43
43
D
99 108Right-handed alpha
Helix 44
44
D
119 123Right-handed 310
Helix 45
45
D
125 132Right-handed alpha
Helix 46
46
D
139 151Right-handed alpha
Helix 47
47
D
165 179Right-handed alpha
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There are 6 sheets in PDB entry 2NTY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 92first strand
Strand 2
A
98 106anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
164 165anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 92first strand
Strand 2
B
98 106anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
164 165anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 49first strand
Strand 2
C
52 59anti-parallel
Strand 3
C
6 13parallel
Strand 4
C
80 86parallel
Strand 5
C
113 118parallel
Strand 6
C
155 157parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 49first strand
Strand 2
D
52 59anti-parallel
Strand 3
D
6 13parallel
Strand 4
D
80 86parallel
Strand 5
D
113 118parallel
Strand 6
D
154 157parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il