Analysis of interatomic Contacts of Structural Units in PDB entry:
2NV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NV1 entry

There are 6 chains in PDB entry 2NV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6LEU 271
B
 LYS 10GLU 270
C
 GLU 7LEU 271
D
 ARG 8GLY 272
E
 THR 6GLU 270
F
 GLY 12LEU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 2NV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 16Right-handed alpha
Helix 2
2
A
27 37Right-handed alpha
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
117 121Right-handed 310
Helix 6
6
A
131 141Right-handed alpha
Helix 7
7
A
157 177Right-handed alpha
Helix 8
8
A
178 180Right-handed 310
Helix 9
9
A
181 190Right-handed alpha
Helix 10
10
A
192 203Right-handed alpha
Helix 11
11
A
217 227Right-handed alpha
Helix 12
12
A
235 241Right-handed 310
Helix 13
13
A
243 257Right-handed alpha
Helix 14
14
A
260 268Right-handed alpha
Helix 15
15
B
10 16Right-handed alpha
Helix 16
16
B
27 38Right-handed alpha
Helix 17
17
B
63 74Right-handed alpha
Helix 18
18
B
86 96Right-handed alpha
Helix 19
19
B
117 121Right-handed 310
Helix 20
20
B
131 141Right-handed alpha
Helix 21
21
B
157 177Right-handed alpha
Helix 22
22
B
178 180Right-handed 310
Helix 23
23
B
181 190Right-handed alpha
Helix 24
24
B
192 203Right-handed alpha
Helix 25
25
B
217 227Right-handed alpha
Helix 26
26
B
235 239Right-handed 310
Helix 27
27
B
243 257Right-handed alpha
Helix 28
28
B
260 269Right-handed alpha
Helix 29
29
C
7 16Right-handed alpha
Helix 30
30
C
27 38Right-handed alpha
Helix 31
31
C
63 74Right-handed alpha
Helix 32
32
C
86 96Right-handed alpha
Helix 33
33
C
117 121Right-handed 310
Helix 34
34
C
131 141Right-handed alpha
Helix 35
35
C
157 177Right-handed alpha
Helix 36
36
C
178 180Right-handed 310
Helix 37
37
C
181 190Right-handed alpha
Helix 38
38
C
192 203Right-handed alpha
Helix 39
39
C
217 227Right-handed alpha
Helix 40
40
C
235 241Right-handed 310
Helix 41
41
C
243 257Right-handed alpha
Helix 42
42
C
260 268Right-handed alpha
Helix 43
43
D
8 16Right-handed alpha
Helix 44
44
D
27 37Right-handed alpha
Helix 45
45
D
63 74Right-handed alpha
Helix 46
46
D
86 97Right-handed alpha
Helix 47
47
D
117 121Right-handed 310
Helix 48
48
D
131 141Right-handed alpha
Helix 49
49
D
157 177Right-handed alpha
Helix 50
50
D
178 180Right-handed 310
Helix 51
51
D
181 190Right-handed alpha
Helix 52
52
D
192 203Right-handed alpha
Helix 53
53
D
217 227Right-handed alpha
Helix 54
54
D
235 241Right-handed 310
Helix 55
55
D
243 257Right-handed alpha
Helix 56
56
D
260 269Right-handed alpha
Helix 57
57
E
6 16Right-handed alpha
Helix 58
58
E
27 38Right-handed alpha
Helix 59
59
E
63 74Right-handed alpha
Helix 60
60
E
86 96Right-handed alpha
Helix 61
61
E
117 121Right-handed 310
Helix 62
62
E
131 141Right-handed alpha
Helix 63
63
E
157 177Right-handed alpha
Helix 64
64
E
178 180Right-handed 310
Helix 65
65
E
181 190Right-handed alpha
Helix 66
66
E
192 203Right-handed alpha
Helix 67
67
E
217 227Right-handed alpha
Helix 68
68
E
235 239Right-handed 310
Helix 69
69
E
243 257Right-handed alpha
Helix 70
70
E
260 269Right-handed alpha
Helix 71
71
F
14 18Right-handed 310
Helix 72
72
F
27 38Right-handed alpha
Helix 73
73
F
63 74Right-handed alpha
Helix 74
74
F
86 97Right-handed alpha
Helix 75
75
F
117 121Right-handed 310
Helix 76
76
F
131 141Right-handed alpha
Helix 77
77
F
157 177Right-handed alpha
Helix 78
78
F
178 180Right-handed 310
Helix 79
79
F
181 190Right-handed alpha
Helix 80
80
F
192 203Right-handed alpha
Helix 81
81
F
217 227Right-handed alpha
Helix 82
82
F
236 241Right-handed alpha
Helix 83
83
F
243 257Right-handed alpha
Helix 84
84
F
260 269Right-handed alpha
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There are 6 sheets in PDB entry 2NV1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
145 148parallel
Strand 3
A
125 129parallel
Strand 4
A
100 103parallel
Strand 5
A
78 82parallel
Strand 6
A
41 44parallel
Strand 7
A
21 25parallel
Strand 8
A
232 234parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
145 148parallel
Strand 3
B
125 129parallel
Strand 4
B
100 103parallel
Strand 5
B
78 82parallel
Strand 6
B
41 44parallel
Strand 7
B
21 25parallel
Strand 8
B
232 234parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
145 148parallel
Strand 3
C
125 129parallel
Strand 4
C
100 103parallel
Strand 5
C
78 82parallel
Strand 6
C
41 44parallel
Strand 7
C
21 25parallel
Strand 8
C
232 234parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 210first strand
Strand 2
D
145 148parallel
Strand 3
D
125 129parallel
Strand 4
D
100 104parallel
Strand 5
D
78 83parallel
Strand 6
D
41 44parallel
Strand 7
D
21 25parallel
Strand 8
D
232 234parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
209 210first strand
Strand 2
E
145 148parallel
Strand 3
E
125 129parallel
Strand 4
E
100 103parallel
Strand 5
E
78 82parallel
Strand 6
E
41 44parallel
Strand 7
E
21 25parallel
Strand 8
E
232 234parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 25first strand
Strand 2
F
41 44parallel
Strand 3
F
78 83parallel
Strand 4
F
100 104parallel
Strand 5
F
125 129parallel
Strand 6
F
145 148parallel
Strand 7
F
209 212parallel
Strand 8
F
232 234parallel
Strand 9
F
21 25parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il