Analysis of interatomic Contacts of Structural Units in PDB entry:
2NV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NV5 entry

There are 3 chains in PDB entry 2NV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1204CYS 1486
B
 SER 1204CYS 1486
C
 SER 1204CYS 1486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2NV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1212 1235Right-handed alpha
Helix 2
2
A
1244 1248Right-handed 310
Helix 3
3
A
1251 1255Right-handed 310
Helix 4
4
A
1263 1265Right-handed 310
Helix 5
5
A
1303 1305Right-handed 310
Helix 6
6
A
1306 1317Right-handed alpha
Helix 7
7
A
1399 1413Right-handed alpha
Helix 8
8
A
1429 1448Right-handed alpha
Helix 9
9
A
1451 1461Right-handed alpha
Helix 10
10
A
1469 1485Right-handed alpha
Helix 11
11
B
1212 1234Right-handed alpha
Helix 12
12
B
1243 1248Right-handed alpha
Helix 13
13
B
1251 1255Right-handed 310
Helix 14
14
B
1303 1305Right-handed 310
Helix 15
15
B
1306 1318Right-handed alpha
Helix 16
16
B
1399 1413Right-handed alpha
Helix 17
17
B
1429 1448Right-handed alpha
Helix 18
18
B
1451 1463Right-handed alpha
Helix 19
19
B
1469 1485Right-handed alpha
Helix 20
20
C
1212 1235Right-handed alpha
Helix 21
21
C
1243 1248Right-handed alpha
Helix 22
22
C
1251 1255Right-handed 310
Helix 23
23
C
1263 1265Right-handed 310
Helix 24
24
C
1303 1305Right-handed 310
Helix 25
25
C
1306 1318Right-handed alpha
Helix 26
26
C
1399 1413Right-handed alpha
Helix 27
27
C
1429 1448Right-handed alpha
Helix 28
28
C
1451 1461Right-handed alpha
Helix 29
29
C
1469 1485Right-handed alpha
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There are 8 sheets in PDB entry 2NV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1208 1209first strand
Strand 2
A
1449 1450anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1267 1269first strand
Strand 2
A
1281 1289anti-parallel
Strand 3
A
1292 1299anti-parallel
Strand 4
A
1420 1423parallel
Strand 5
A
1321 1324parallel
Strand 6
A
1380 1387parallel
Strand 7
A
1364 1373anti-parallel
Strand 8
A
1351 1360anti-parallel
Strand 9
A
1345 1348anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1329 1330first strand
Strand 2
A
1333 1334anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1208 1209first strand
Strand 2
B
1449 1450anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1267 1269first strand
Strand 2
B
1281 1289anti-parallel
Strand 3
B
1292 1299anti-parallel
Strand 4
B
1420 1423parallel
Strand 5
B
1321 1324parallel
Strand 6
B
1379 1387parallel
Strand 7
B
1364 1373anti-parallel
Strand 8
B
1351 1360anti-parallel
Strand 9
B
1345 1348anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1208 1209first strand
Strand 2
C
1449 1450anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1267 1269first strand
Strand 2
C
1281 1289anti-parallel
Strand 3
C
1292 1299anti-parallel
Strand 4
C
1420 1423parallel
Strand 5
C
1321 1324parallel
Strand 6
C
1380 1387parallel
Strand 7
C
1364 1373anti-parallel
Strand 8
C
1351 1360anti-parallel
Strand 9
C
1345 1348anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1329 1330first strand
Strand 2
C
1333 1334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il