Analysis of interatomic Contacts of Structural Units in PDB entry:
2NV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2NV9 entry

There are 8 chains in PDB entry 2NV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 372
B	MET 1	ILE 372
C	MET 1	ILE 372
D	MET 1	ILE 372
E	MET 1	ILE 372
F	MET 1	ILE 372
G	MET 1	ILE 372
H	MET 1	ILE 372

There are128 helices in PDB entry 2NV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	12	Right-handed alpha
Helix 2	2	A	23	38	Right-handed alpha
Helix 3	3	A	48	50	Right-handed 310
Helix 4	4	A	52	62	Right-handed alpha
Helix 5	5	A	70	80	Right-handed alpha
Helix 6	6	A	83	85	Right-handed 310
Helix 7	7	A	95	106	Right-handed alpha
Helix 8	8	A	114	125	Right-handed alpha
Helix 9	9	A	152	154	Right-handed 310
Helix 10	10	A	155	166	Right-handed alpha
Helix 11	11	A	183	205	Right-handed alpha
Helix 12	12	A	230	242	Right-handed alpha
Helix 13	13	A	254	259	Right-handed alpha
Helix 14	14	A	290	296	Right-handed alpha
Helix 15	15	A	354	358	Right-handed 310
Helix 16	16	A	360	364	Right-handed 310
Helix 17	17	B	1	12	Right-handed alpha
Helix 18	18	B	23	38	Right-handed alpha
Helix 19	19	B	48	50	Right-handed 310
Helix 20	20	B	52	62	Right-handed alpha
Helix 21	21	B	70	80	Right-handed alpha
Helix 22	22	B	83	85	Right-handed 310
Helix 23	23	B	95	106	Right-handed alpha
Helix 24	24	B	114	125	Right-handed alpha
Helix 25	25	B	152	154	Right-handed 310
Helix 26	26	B	155	166	Right-handed alpha
Helix 27	27	B	183	205	Right-handed alpha
Helix 28	28	B	228	242	Right-handed alpha
Helix 29	29	B	254	259	Right-handed alpha
Helix 30	30	B	290	296	Right-handed alpha
Helix 31	31	B	354	358	Right-handed 310
Helix 32	32	B	360	364	Right-handed 310
Helix 33	33	C	1	12	Right-handed alpha
Helix 34	34	C	23	38	Right-handed alpha
Helix 35	35	C	48	50	Right-handed 310
Helix 36	36	C	52	62	Right-handed alpha
Helix 37	37	C	70	80	Right-handed alpha
Helix 38	38	C	83	85	Right-handed 310
Helix 39	39	C	95	106	Right-handed alpha
Helix 40	40	C	114	125	Right-handed alpha
Helix 41	41	C	152	154	Right-handed 310
Helix 42	42	C	155	166	Right-handed alpha
Helix 43	43	C	183	205	Right-handed alpha
Helix 44	44	C	230	242	Right-handed alpha
Helix 45	45	C	254	259	Right-handed alpha
Helix 46	46	C	291	296	Right-handed alpha
Helix 47	47	C	354	358	Right-handed 310
Helix 48	48	C	360	364	Right-handed 310
Helix 49	49	D	1	12	Right-handed alpha
Helix 50	50	D	23	38	Right-handed alpha
Helix 51	51	D	48	50	Right-handed 310
Helix 52	52	D	52	62	Right-handed alpha
Helix 53	53	D	70	80	Right-handed alpha
Helix 54	54	D	83	85	Right-handed 310
Helix 55	55	D	95	106	Right-handed alpha
Helix 56	56	D	114	125	Right-handed alpha
Helix 57	57	D	152	154	Right-handed 310
Helix 58	58	D	155	166	Right-handed alpha
Helix 59	59	D	183	205	Right-handed alpha
Helix 60	60	D	230	242	Right-handed alpha
Helix 61	61	D	254	259	Right-handed alpha
Helix 62	62	D	291	296	Right-handed alpha
Helix 63	63	D	354	358	Right-handed 310
Helix 64	64	D	360	364	Right-handed 310
Helix 65	65	E	1	12	Right-handed alpha
Helix 66	66	E	23	38	Right-handed alpha
Helix 67	67	E	48	50	Right-handed 310
Helix 68	68	E	52	62	Right-handed alpha
Helix 69	69	E	70	80	Right-handed alpha
Helix 70	70	E	83	85	Right-handed 310
Helix 71	71	E	95	106	Right-handed alpha
Helix 72	72	E	114	125	Right-handed alpha
Helix 73	73	E	152	154	Right-handed 310
Helix 74	74	E	155	166	Right-handed alpha
Helix 75	75	E	183	205	Right-handed alpha
Helix 76	76	E	230	242	Right-handed alpha
Helix 77	77	E	254	259	Right-handed alpha
Helix 78	78	E	291	296	Right-handed alpha
Helix 79	79	E	354	358	Right-handed 310
Helix 80	80	E	360	364	Right-handed 310
Helix 81	81	F	1	12	Right-handed alpha
Helix 82	82	F	23	38	Right-handed alpha
Helix 83	83	F	48	50	Right-handed 310
Helix 84	84	F	52	62	Right-handed alpha
Helix 85	85	F	70	81	Right-handed alpha
Helix 86	86	F	83	85	Right-handed 310
Helix 87	87	F	95	106	Right-handed alpha
Helix 88	88	F	114	125	Right-handed alpha
Helix 89	89	F	152	154	Right-handed 310
Helix 90	90	F	155	166	Right-handed alpha
Helix 91	91	F	183	205	Right-handed alpha
Helix 92	92	F	228	242	Right-handed alpha
Helix 93	93	F	254	259	Right-handed alpha
Helix 94	94	F	290	296	Right-handed alpha
Helix 95	95	F	354	358	Right-handed 310
Helix 96	96	F	360	364	Right-handed 310
Helix 97	97	G	1	9	Right-handed alpha
Helix 98	98	G	23	38	Right-handed alpha
Helix 99	99	G	48	50	Right-handed 310
Helix 100	100	G	52	62	Right-handed alpha
Helix 101	101	G	70	80	Right-handed alpha
Helix 102	102	G	83	85	Right-handed 310
Helix 103	103	G	95	106	Right-handed alpha
Helix 104	104	G	114	125	Right-handed alpha
Helix 105	105	G	152	154	Right-handed 310
Helix 106	106	G	155	166	Right-handed alpha
Helix 107	107	G	183	205	Right-handed alpha
Helix 108	108	G	228	242	Right-handed alpha
Helix 109	109	G	254	259	Right-handed alpha
Helix 110	110	G	290	296	Right-handed alpha
Helix 111	111	G	354	358	Right-handed 310
Helix 112	112	G	360	364	Right-handed 310
Helix 113	113	H	1	12	Right-handed alpha
Helix 114	114	H	23	38	Right-handed alpha
Helix 115	115	H	48	50	Right-handed 310
Helix 116	116	H	52	62	Right-handed alpha
Helix 117	117	H	70	81	Right-handed alpha
Helix 118	118	H	83	85	Right-handed 310
Helix 119	119	H	95	106	Right-handed alpha
Helix 120	120	H	114	125	Right-handed alpha
Helix 121	121	H	152	154	Right-handed 310
Helix 122	122	H	155	166	Right-handed alpha
Helix 123	123	H	183	205	Right-handed alpha
Helix 124	124	H	230	242	Right-handed alpha
Helix 125	125	H	254	259	Right-handed alpha
Helix 126	126	H	290	296	Right-handed alpha
Helix 127	127	H	354	358	Right-handed 310
Helix 128	128	H	360	364	Right-handed 310

There are 27 sheets in PDB entry 2NV9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	344	347	anti-parallel
Strand 3	A	262	274	anti-parallel
Strand 4	A	277	282	anti-parallel
Strand 5	A	314	320	parallel
Strand 6	A	329	337	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	344	347	anti-parallel
Strand 3	A	262	274	anti-parallel
Strand 4	A	18	22	anti-parallel
Strand 5	A	367	371	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	65	67	parallel
Strand 3	A	41	46	parallel
Strand 4	A	248	251	parallel
Strand 5	A	210	212	parallel
Strand 6	A	170	174	parallel
Strand 7	A	129	133	parallel
Strand 8	A	109	112	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	225	226	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	344	347	anti-parallel
Strand 3	B	262	274	anti-parallel
Strand 4	B	277	282	anti-parallel
Strand 5	B	314	320	parallel
Strand 6	B	329	337	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	344	347	anti-parallel
Strand 3	B	262	274	anti-parallel
Strand 4	B	18	22	anti-parallel
Strand 5	B	367	371	parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	65	68	parallel
Strand 3	B	87	89	parallel
Strand 4	B	109	112	parallel
Strand 5	B	129	133	parallel
Strand 6	B	170	174	parallel
Strand 7	B	210	212	parallel
Strand 8	B	248	251	parallel
Strand 9	B	41	46	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	225	226	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	344	347	anti-parallel
Strand 3	C	262	274	anti-parallel
Strand 4	C	277	282	anti-parallel
Strand 5	C	314	320	parallel
Strand 6	C	329	337	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	344	347	anti-parallel
Strand 3	C	262	274	anti-parallel
Strand 4	C	18	22	anti-parallel
Strand 5	C	367	371	parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	46	first strand
Strand 2	C	65	68	parallel
Strand 3	C	87	89	parallel
Strand 4	C	109	112	parallel
Strand 5	C	129	133	parallel
Strand 6	C	170	174	parallel
Strand 7	C	210	212	parallel
Strand 8	C	248	251	parallel
Strand 9	C	41	46	parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	D	344	347	anti-parallel
Strand 3	D	262	274	anti-parallel
Strand 4	D	277	282	anti-parallel
Strand 5	D	314	320	parallel
Strand 6	D	329	337	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	D	344	347	anti-parallel
Strand 3	D	262	274	anti-parallel
Strand 4	D	18	22	anti-parallel
Strand 5	D	367	371	parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	65	67	parallel
Strand 3	D	41	46	parallel
Strand 4	D	248	251	parallel
Strand 5	D	210	212	parallel
Strand 6	D	170	174	parallel
Strand 7	D	129	133	parallel
Strand 8	D	109	112	parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	344	347	anti-parallel
Strand 3	E	262	274	anti-parallel
Strand 4	E	277	282	anti-parallel
Strand 5	E	314	320	parallel
Strand 6	E	329	337	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	344	347	anti-parallel
Strand 3	E	262	274	anti-parallel
Strand 4	E	18	22	anti-parallel
Strand 5	E	367	371	parallel

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There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	46	first strand
Strand 2	E	65	68	parallel
Strand 3	E	87	89	parallel
Strand 4	E	109	112	parallel
Strand 5	E	129	133	parallel
Strand 6	E	170	174	parallel
Strand 7	E	210	212	parallel
Strand 8	E	248	251	parallel
Strand 9	E	41	46	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	222	first strand
Strand 2	E	225	226	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	303	304	first strand
Strand 2	F	344	347	anti-parallel
Strand 3	F	262	274	anti-parallel
Strand 4	F	277	282	anti-parallel
Strand 5	F	314	320	parallel
Strand 6	F	329	337	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	303	304	first strand
Strand 2	F	344	347	anti-parallel
Strand 3	F	262	274	anti-parallel
Strand 4	F	18	22	anti-parallel
Strand 5	F	367	371	parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	F	65	67	parallel
Strand 3	F	41	46	parallel
Strand 4	F	248	251	parallel
Strand 5	F	210	212	parallel
Strand 6	F	170	174	parallel
Strand 7	F	129	133	parallel
Strand 8	F	109	112	parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	303	304	first strand
Strand 2	G	344	347	anti-parallel
Strand 3	G	262	274	anti-parallel
Strand 4	G	277	282	anti-parallel
Strand 5	G	314	320	parallel
Strand 6	G	329	337	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	303	304	first strand
Strand 2	G	344	347	anti-parallel
Strand 3	G	262	274	anti-parallel
Strand 4	G	18	22	anti-parallel
Strand 5	G	367	371	parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	88	first strand
Strand 2	G	65	67	parallel
Strand 3	G	41	46	parallel
Strand 4	G	248	251	parallel
Strand 5	G	210	212	parallel
Strand 6	G	170	174	parallel
Strand 7	G	129	133	parallel
Strand 8	G	109	112	parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	303	304	first strand
Strand 2	H	344	347	anti-parallel
Strand 3	H	262	274	anti-parallel
Strand 4	H	277	282	anti-parallel
Strand 5	H	314	320	parallel
Strand 6	H	329	337	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	303	304	first strand
Strand 2	H	344	347	anti-parallel
Strand 3	H	262	274	anti-parallel
Strand 4	H	18	22	anti-parallel
Strand 5	H	367	371	parallel

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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	88	first strand
Strand 2	H	65	67	parallel
Strand 3	H	41	46	parallel
Strand 4	H	248	251	parallel
Strand 5	H	210	212	parallel
Strand 6	H	170	174	parallel
Strand 7	H	129	133	parallel
Strand 8	H	109	112	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2NV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
2NV9