Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NVK entry

There is 1 chain in PDB entry 2NVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 TYR 8SER 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2NVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
18 31Right-handed alpha
Helix 2
2
X
55 61Right-handed alpha
Helix 3
3
X
61 82Right-handed alpha
Helix 4
4
X
83 85Right-handed 310
Helix 5
5
X
95 121Right-handed alpha
Helix 6
6
X
169 174Right-handed alpha
Helix 7
7
X
176 181Right-handed alpha
Helix 8
8
X
196 209Right-handed alpha
Helix 9
9
X
226 240Right-handed alpha
Helix 10
10
X
291 299Right-handed 310
Helix 11
11
X
334 351Right-handed alpha
Helix 12
12
X
378 387Right-handed alpha
Helix 13
13
X
400 404Right-handed 310
Helix 14
14
X
436 450Right-handed alpha
Helix 15
15
X
453 460Right-handed alpha
Helix 16
16
X
467 474Right-handed 310
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There are 6 sheets in PDB entry 2NVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
124 126first strand
Strand 2
X
35 38parallel
Strand 3
X
12 15parallel
Strand 4
X
153 156parallel
Strand 5
X
321 323parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
128 134first strand
Strand 2
X
137 142anti-parallel
Strand 3
X
147 148anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
160 162first strand
Strand 2
X
287 289anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
244 245first strand
Strand 2
X
212 216parallel
Strand 3
X
189 193parallel
Strand 4
X
280 283parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
248 255first strand
Strand 2
X
261 267anti-parallel
Strand 3
X
273 278anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
364 366first strand
Strand 2
X
371 376anti-parallel
Strand 3
X
427 434anti-parallel
Strand 4
X
414 420anti-parallel
Strand 5
X
391 397anti-parallel
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