Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NVP entry

There is 1 chain in PDB entry 2NVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2NVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 22Right-handed alpha
Helix 2
2
A
25 43Right-handed alpha
Helix 3
3
A
63 71Right-handed alpha
Helix 4
4
A
72 77Right-handed 310
Helix 5
5
A
80 82Right-handed 310
Helix 6
6
A
83 101Right-handed alpha
Helix 7
7
A
133 152Right-handed alpha
Helix 8
8
A
158 175Right-handed alpha
Helix 9
9
A
177 182Right-handed alpha
Helix 10
10
A
228 249Right-handed alpha
Helix 11
11
A
252 272Right-handed alpha
Helix 12
12
A
305 307Right-handed 310
Helix 13
13
A
308 313Right-handed alpha
Helix 14
14
A
319 330Right-handed alpha
Helix 15
15
A
358 367Right-handed alpha
Helix 16
16
A
370 384Right-handed alpha
Helix 17
17
A
408 423Right-handed alpha
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There are 5 sheets in PDB entry 2NVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
50 53anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
106 107anti-parallel
Strand 3
A
127 129anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
282 285anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
344 346anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
394 396anti-parallel
Strand 3
A
399 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il