Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2NVV entry

There are 6 chains in PDB entry 2NVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	MSE 497
B	ALA 2	MSE 497
C	ALA 2	MSE 497
D	ALA 2	MSE 497
E	ALA 2	MSE 497
F	ALA 2	MSE 497

There are144 helices in PDB entry 2NVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	13	Right-handed alpha
Helix 2	2	A	34	48	Right-handed alpha
Helix 3	3	A	67	74	Right-handed alpha
Helix 4	4	A	86	95	Right-handed alpha
Helix 5	5	A	104	106	Right-handed 310
Helix 6	6	A	107	114	Right-handed alpha
Helix 7	7	A	144	152	Right-handed alpha
Helix 8	8	A	164	168	Right-handed 310
Helix 9	9	A	202	204	Right-handed 310
Helix 10	10	A	225	245	Right-handed alpha
Helix 11	11	A	260	273	Right-handed alpha
Helix 12	12	A	287	296	Right-handed alpha
Helix 13	13	A	310	319	Right-handed alpha
Helix 14	14	A	320	325	Right-handed alpha
Helix 15	15	A	332	337	Right-handed alpha
Helix 16	16	A	338	346	Right-handed alpha
Helix 17	17	A	368	370	Right-handed 310
Helix 18	18	A	378	386	Right-handed alpha
Helix 19	19	A	398	401	Right-handed 310
Helix 20	20	A	435	447	Right-handed alpha
Helix 21	21	A	449	451	Right-handed 310
Helix 22	22	A	452	460	Right-handed alpha
Helix 23	23	A	476	485	Right-handed alpha
Helix 24	24	A	487	491	Right-handed 310
Helix 25	25	B	7	13	Right-handed alpha
Helix 26	26	B	34	48	Right-handed alpha
Helix 27	27	B	67	74	Right-handed alpha
Helix 28	28	B	86	95	Right-handed alpha
Helix 29	29	B	104	106	Right-handed 310
Helix 30	30	B	107	114	Right-handed alpha
Helix 31	31	B	144	152	Right-handed alpha
Helix 32	32	B	164	168	Right-handed 310
Helix 33	33	B	202	204	Right-handed 310
Helix 34	34	B	225	245	Right-handed alpha
Helix 35	35	B	260	273	Right-handed alpha
Helix 36	36	B	287	296	Right-handed alpha
Helix 37	37	B	310	319	Right-handed alpha
Helix 38	38	B	320	325	Right-handed alpha
Helix 39	39	B	332	337	Right-handed alpha
Helix 40	40	B	338	346	Right-handed alpha
Helix 41	41	B	368	370	Right-handed 310
Helix 42	42	B	378	386	Right-handed alpha
Helix 43	43	B	398	401	Right-handed 310
Helix 44	44	B	435	447	Right-handed alpha
Helix 45	45	B	449	451	Right-handed 310
Helix 46	46	B	452	460	Right-handed alpha
Helix 47	47	B	476	485	Right-handed alpha
Helix 48	48	B	487	491	Right-handed 310
Helix 49	49	C	7	13	Right-handed alpha
Helix 50	50	C	34	48	Right-handed alpha
Helix 51	51	C	67	74	Right-handed alpha
Helix 52	52	C	86	95	Right-handed alpha
Helix 53	53	C	104	106	Right-handed 310
Helix 54	54	C	107	114	Right-handed alpha
Helix 55	55	C	144	152	Right-handed alpha
Helix 56	56	C	164	168	Right-handed 310
Helix 57	57	C	202	204	Right-handed 310
Helix 58	58	C	225	245	Right-handed alpha
Helix 59	59	C	260	273	Right-handed alpha
Helix 60	60	C	287	296	Right-handed alpha
Helix 61	61	C	310	319	Right-handed alpha
Helix 62	62	C	320	325	Right-handed alpha
Helix 63	63	C	332	337	Right-handed alpha
Helix 64	64	C	338	346	Right-handed alpha
Helix 65	65	C	368	370	Right-handed 310
Helix 66	66	C	378	386	Right-handed alpha
Helix 67	67	C	398	401	Right-handed 310
Helix 68	68	C	435	447	Right-handed alpha
Helix 69	69	C	449	451	Right-handed 310
Helix 70	70	C	452	460	Right-handed alpha
Helix 71	71	C	476	485	Right-handed alpha
Helix 72	72	C	487	491	Right-handed 310
Helix 73	73	D	7	13	Right-handed alpha
Helix 74	74	D	34	48	Right-handed alpha
Helix 75	75	D	67	74	Right-handed alpha
Helix 76	76	D	86	95	Right-handed alpha
Helix 77	77	D	104	106	Right-handed 310
Helix 78	78	D	107	114	Right-handed alpha
Helix 79	79	D	144	152	Right-handed alpha
Helix 80	80	D	164	168	Right-handed 310
Helix 81	81	D	202	204	Right-handed 310
Helix 82	82	D	225	245	Right-handed alpha
Helix 83	83	D	260	273	Right-handed alpha
Helix 84	84	D	287	296	Right-handed alpha
Helix 85	85	D	310	319	Right-handed alpha
Helix 86	86	D	320	325	Right-handed alpha
Helix 87	87	D	332	337	Right-handed alpha
Helix 88	88	D	338	346	Right-handed alpha
Helix 89	89	D	368	370	Right-handed 310
Helix 90	90	D	378	386	Right-handed alpha
Helix 91	91	D	398	401	Right-handed 310
Helix 92	92	D	435	447	Right-handed alpha
Helix 93	93	D	449	451	Right-handed 310
Helix 94	94	D	452	460	Right-handed alpha
Helix 95	95	D	476	485	Right-handed alpha
Helix 96	96	D	487	491	Right-handed 310
Helix 97	97	E	7	13	Right-handed alpha
Helix 98	98	E	34	48	Right-handed alpha
Helix 99	99	E	67	74	Right-handed alpha
Helix 100	100	E	86	95	Right-handed alpha
Helix 101	101	E	104	106	Right-handed 310
Helix 102	102	E	107	114	Right-handed alpha
Helix 103	103	E	144	152	Right-handed alpha
Helix 104	104	E	164	168	Right-handed 310
Helix 105	105	E	202	204	Right-handed 310
Helix 106	106	E	225	246	Right-handed alpha
Helix 107	107	E	260	273	Right-handed alpha
Helix 108	108	E	287	296	Right-handed alpha
Helix 109	109	E	310	319	Right-handed alpha
Helix 110	110	E	320	325	Right-handed alpha
Helix 111	111	E	332	337	Right-handed alpha
Helix 112	112	E	338	346	Right-handed alpha
Helix 113	113	E	368	370	Right-handed 310
Helix 114	114	E	378	386	Right-handed alpha
Helix 115	115	E	398	401	Right-handed 310
Helix 116	116	E	435	447	Right-handed alpha
Helix 117	117	E	449	451	Right-handed 310
Helix 118	118	E	452	460	Right-handed alpha
Helix 119	119	E	476	485	Right-handed alpha
Helix 120	120	E	487	491	Right-handed 310
Helix 121	121	F	7	13	Right-handed alpha
Helix 122	122	F	34	48	Right-handed alpha
Helix 123	123	F	67	74	Right-handed alpha
Helix 124	124	F	86	95	Right-handed alpha
Helix 125	125	F	104	106	Right-handed 310
Helix 126	126	F	107	114	Right-handed alpha
Helix 127	127	F	144	152	Right-handed alpha
Helix 128	128	F	164	168	Right-handed 310
Helix 129	129	F	202	204	Right-handed 310
Helix 130	130	F	225	245	Right-handed alpha
Helix 131	131	F	260	273	Right-handed alpha
Helix 132	132	F	287	296	Right-handed alpha
Helix 133	133	F	310	319	Right-handed alpha
Helix 134	134	F	320	325	Right-handed alpha
Helix 135	135	F	332	337	Right-handed alpha
Helix 136	136	F	338	346	Right-handed alpha
Helix 137	137	F	368	370	Right-handed 310
Helix 138	138	F	378	386	Right-handed alpha
Helix 139	139	F	398	401	Right-handed 310
Helix 140	140	F	435	447	Right-handed alpha
Helix 141	141	F	449	451	Right-handed 310
Helix 142	142	F	452	460	Right-handed alpha
Helix 143	143	F	476	485	Right-handed alpha
Helix 144	144	F	487	491	Right-handed 310

There are 48 sheets in PDB entry 2NVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	77	81	parallel
Strand 3	A	55	58	parallel
Strand 4	A	20	23	parallel
Strand 5	A	122	127	parallel
Strand 6	A	154	160	parallel
Strand 7	A	206	212	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	135	137	anti-parallel
Strand 3	A	199	200	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	348	352	parallel
Strand 3	A	389	392	parallel
Strand 4	A	421	424	parallel
Strand 5	A	427	430	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	299	304	parallel
Strand 3	A	328	330	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	306	307	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	355	357	anti-parallel
Strand 3	A	405	406	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	371	372	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	397	first strand
Strand 2	A	402	403	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	77	81	parallel
Strand 3	B	55	58	parallel
Strand 4	B	20	23	parallel
Strand 5	B	122	130	parallel
Strand 6	B	135	138	anti-parallel
Strand 7	B	199	200	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	77	81	parallel
Strand 3	B	55	58	parallel
Strand 4	B	20	23	parallel
Strand 5	B	122	130	parallel
Strand 6	B	154	160	parallel
Strand 7	B	206	212	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	348	352	parallel
Strand 3	B	389	392	parallel
Strand 4	B	421	424	parallel
Strand 5	B	427	430	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	299	304	parallel
Strand 3	B	328	330	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	306	307	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	355	357	anti-parallel
Strand 3	B	405	406	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	371	372	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	397	first strand
Strand 2	B	402	403	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	77	81	parallel
Strand 3	C	55	58	parallel
Strand 4	C	20	23	parallel
Strand 5	C	122	127	parallel
Strand 6	C	154	160	parallel
Strand 7	C	206	212	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	135	137	anti-parallel
Strand 3	C	199	200	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	348	352	parallel
Strand 3	C	389	392	parallel
Strand 4	C	421	424	parallel
Strand 5	C	427	430	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	282	first strand
Strand 2	C	299	304	parallel
Strand 3	C	328	330	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	306	307	parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	355	357	anti-parallel
Strand 3	C	405	406	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	371	372	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	397	first strand
Strand 2	C	402	403	anti-parallel

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There are 7 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	77	81	parallel
Strand 3	D	55	58	parallel
Strand 4	D	20	23	parallel
Strand 5	D	122	127	parallel
Strand 6	D	154	160	parallel
Strand 7	D	206	212	parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	135	137	anti-parallel
Strand 3	D	199	200	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	348	352	parallel
Strand 3	D	389	392	parallel
Strand 4	D	421	424	parallel
Strand 5	D	427	430	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	282	first strand
Strand 2	D	299	304	parallel
Strand 3	D	328	330	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	286	first strand
Strand 2	D	306	307	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	355	357	anti-parallel
Strand 3	D	405	406	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	367	first strand
Strand 2	D	371	372	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	397	first strand
Strand 2	D	402	403	anti-parallel

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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	77	81	parallel
Strand 3	E	55	58	parallel
Strand 4	E	20	23	parallel
Strand 5	E	122	127	parallel
Strand 6	E	154	160	parallel
Strand 7	E	206	212	parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	135	137	anti-parallel
Strand 3	E	199	200	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	257	first strand
Strand 2	E	348	352	parallel
Strand 3	E	389	392	parallel
Strand 4	E	421	424	parallel
Strand 5	E	427	430	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	279	282	first strand
Strand 2	E	299	304	parallel
Strand 3	E	328	330	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	286	first strand
Strand 2	E	306	307	parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	363	first strand
Strand 2	E	355	357	anti-parallel
Strand 3	E	405	406	parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	366	367	first strand
Strand 2	E	371	372	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	396	397	first strand
Strand 2	E	402	403	anti-parallel

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There are 7 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	77	81	parallel
Strand 3	F	55	58	parallel
Strand 4	F	20	23	parallel
Strand 5	F	122	127	parallel
Strand 6	F	154	160	parallel
Strand 7	F	206	212	parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	130	first strand
Strand 2	F	135	137	anti-parallel
Strand 3	F	199	200	anti-parallel

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There are 5 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	257	first strand
Strand 2	F	348	352	parallel
Strand 3	F	389	392	parallel
Strand 4	F	421	424	parallel
Strand 5	F	427	430	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	282	first strand
Strand 2	F	299	304	parallel
Strand 3	F	328	330	parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	285	286	first strand
Strand 2	F	306	307	parallel

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There are 3 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	362	363	first strand
Strand 2	F	355	357	anti-parallel
Strand 3	F	405	406	parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	367	first strand
Strand 2	F	371	372	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	396	397	first strand
Strand 2	F	402	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2NVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVV