Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NVW entry

There are 2 chains in PDB entry 2NVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -14ILE 457
B
 HIS -14ILE 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2NVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-11 -3Right-handed 310
Helix 2
2
A
7 11Right-handed 310
Helix 3
3
A
12 16Right-handed 310
Helix 4
4
A
30 35Right-handed alpha
Helix 5
5
A
35 43Right-handed alpha
Helix 6
6
A
56 67Right-handed alpha
Helix 7
7
A
77 84Right-handed alpha
Helix 8
8
A
95 110Right-handed alpha
Helix 9
9
A
128 141Right-handed alpha
Helix 10
10
A
151 155Right-handed 310
Helix 11
11
A
156 168Right-handed alpha
Helix 12
12
A
195 204Right-handed 310
Helix 13
13
A
210 224Right-handed alpha
Helix 14
14
A
271 273Right-handed 310
Helix 15
15
A
375 394Right-handed alpha
Helix 16
16
A
426 447Right-handed alpha
Helix 17
17
B
-11 -7Right-handed 310
Helix 18
18
B
30 35Right-handed alpha
Helix 19
19
B
35 43Right-handed alpha
Helix 20
20
B
56 67Right-handed alpha
Helix 21
21
B
77 84Right-handed alpha
Helix 22
22
B
95 109Right-handed alpha
Helix 23
23
B
128 141Right-handed alpha
Helix 24
24
B
151 155Right-handed 310
Helix 25
25
B
156 168Right-handed alpha
Helix 26
26
B
195 200Right-handed alpha
Helix 27
27
B
201 204Right-handed 310
Helix 28
28
B
210 224Right-handed alpha
Helix 29
29
B
375 394Right-handed alpha
Helix 30
30
B
426 447Right-handed alpha
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There are 6 sheets in PDB entry 2NVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
47 53parallel
Strand 3
A
18 23parallel
Strand 4
A
89 92parallel
Strand 5
A
118 122parallel
Strand 6
A
146 150parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 369first strand
Strand 2
A
318 325anti-parallel
Strand 3
A
303 308anti-parallel
Strand 4
A
293 299anti-parallel
Strand 5
A
174 182anti-parallel
Strand 6
A
275 281parallel
Strand 7
A
262 269anti-parallel
Strand 8
A
227 235anti-parallel
Strand 9
A
450 451anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
240 244parallel
Strand 3
A
254 256anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
47 53parallel
Strand 3
B
18 23parallel
Strand 4
B
89 92parallel
Strand 5
B
118 122parallel
Strand 6
B
146 150parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 369first strand
Strand 2
B
319 324anti-parallel
Strand 3
B
303 308anti-parallel
Strand 4
B
293 299anti-parallel
Strand 5
B
174 182anti-parallel
Strand 6
B
274 281parallel
Strand 7
B
262 269anti-parallel
Strand 8
B
227 235anti-parallel
Strand 9
B
450 451anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
240 243parallel
Strand 3
B
254 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il