Analysis of interatomic Contacts of Structural Units in PDB entry:
2NWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NWU entry

There are 2 chains in PDB entry 2NWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ASP 144
B
 ASP 2PRO 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2NWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
49 52Right-handed 310
Helix 3
3
A
53 63Right-handed alpha
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
87 93Right-handed alpha
Helix 6
6
A
118 127Right-handed alpha
Helix 7
7
B
15 25Right-handed alpha
Helix 8
8
B
49 52Right-handed 310
Helix 9
9
B
53 63Right-handed alpha
Helix 10
10
B
65 76Right-handed alpha
Helix 11
11
B
87 93Right-handed alpha
Helix 12
12
B
118 127Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2NWU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
41 47anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
110 115anti-parallel
Strand 5
A
81 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
134 135anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 37first strand
Strand 2
B
40 47anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
110 115anti-parallel
Strand 5
B
81 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
134 135anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il