Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYA entry

There are 2 chains in PDB entry 2NYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1LYS 791
F
 GLU 1LYS 791
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 2NYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed alpha
Helix 2
2
A
51 54Right-handed 310
Helix 3
3
A
83 102Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
116 129Right-handed alpha
Helix 6
6
A
140 142Right-handed 310
Helix 7
7
A
144 155Right-handed alpha
Helix 8
8
A
163 170Right-handed 310
Helix 9
9
A
179 184Right-handed alpha
Helix 10
10
A
184 197Right-handed alpha
Helix 11
11
A
211 217Right-handed 310
Helix 12
12
A
227 242Right-handed alpha
Helix 13
13
A
246 253Right-handed alpha
Helix 14
14
A
271 276Right-handed alpha
Helix 15
15
A
289 299Right-handed alpha
Helix 16
16
A
301 310Right-handed alpha
Helix 17
17
A
312 325Right-handed alpha
Helix 18
18
A
335 340Right-handed alpha
Helix 19
19
A
343 359Right-handed alpha
Helix 20
20
A
380 385Right-handed alpha
Helix 21
21
A
399 411Right-handed alpha
Helix 22
22
A
424 434Right-handed alpha
Helix 23
23
A
446 451Right-handed alpha
Helix 24
24
A
457 464Right-handed alpha
Helix 25
25
A
477 482Right-handed alpha
Helix 26
26
A
491 495Right-handed 310
Helix 27
27
A
521 530Right-handed alpha
Helix 28
28
A
531 533Right-handed 310
Helix 29
29
A
534 539Right-handed alpha
Helix 30
30
A
540 545Right-handed alpha
Helix 31
31
A
546 551Right-handed 310
Helix 32
32
A
554 560Right-handed alpha
Helix 33
33
A
569 573Right-handed 310
Helix 34
34
A
579 586Right-handed alpha
Helix 35
35
A
588 602Right-handed alpha
Helix 36
36
A
610 615Right-handed alpha
Helix 37
37
A
694 697Right-handed 310
Helix 38
38
A
698 703Right-handed alpha
Helix 39
39
A
713 719Right-handed alpha
Helix 40
40
A
764 768Right-handed 310
Helix 41
41
F
45 50Right-handed alpha
Helix 42
42
F
51 54Right-handed 310
Helix 43
43
F
83 102Right-handed alpha
Helix 44
44
F
103 105Right-handed 310
Helix 45
45
F
116 130Right-handed alpha
Helix 46
46
F
140 143Right-handed 310
Helix 47
47
F
144 156Right-handed alpha
Helix 48
48
F
163 170Right-handed 310
Helix 49
49
F
179 184Right-handed alpha
Helix 50
50
F
184 197Right-handed alpha
Helix 51
51
F
213 217Right-handed 310
Helix 52
52
F
227 242Right-handed alpha
Helix 53
53
F
246 251Right-handed alpha
Helix 54
54
F
271 276Right-handed alpha
Helix 55
55
F
289 299Right-handed alpha
Helix 56
56
F
301 310Right-handed alpha
Helix 57
57
F
312 325Right-handed alpha
Helix 58
58
F
335 340Right-handed alpha
Helix 59
59
F
343 359Right-handed alpha
Helix 60
60
F
380 385Right-handed alpha
Helix 61
61
F
399 411Right-handed alpha
Helix 62
62
F
424 434Right-handed alpha
Helix 63
63
F
446 451Right-handed alpha
Helix 64
64
F
457 463Right-handed alpha
Helix 65
65
F
477 482Right-handed alpha
Helix 66
66
F
491 495Right-handed 310
Helix 67
67
F
522 531Right-handed alpha
Helix 68
68
F
532 533Right-handed 310
Helix 69
69
F
534 538Right-handed 310
Helix 70
70
F
540 545Right-handed alpha
Helix 71
71
F
546 551Right-handed 310
Helix 72
72
F
554 560Right-handed alpha
Helix 73
73
F
569 573Right-handed 310
Helix 74
74
F
579 586Right-handed alpha
Helix 75
75
F
588 599Right-handed alpha
Helix 76
76
F
610 615Right-handed alpha
Helix 77
77
F
694 697Right-handed 310
Helix 78
78
F
698 703Right-handed alpha
Helix 79
79
F
713 719Right-handed alpha
Helix 80
80
F
764 768Right-handed 310
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There are 13 sheets in PDB entry 2NYA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
27 33anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
485 488anti-parallel
Strand 4
A
468 473parallel
Strand 5
A
439 443parallel
Strand 6
A
107 111parallel
Strand 7
A
136 138parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
202 207parallel
Strand 3
A
172 176parallel
Strand 4
A
330 334parallel
Strand 5
A
367 370parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
658 662parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 500first strand
Strand 2
A
505 509anti-parallel
Strand 3
A
620 621anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 683first strand
Strand 2
A
753 757parallel
Strand 3
A
709 711anti-parallel
Strand 4
A
735 742parallel
Strand 5
A
727 732anti-parallel
Strand 6
A
785 790anti-parallel
Strand 7
A
678 683anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 9first strand
Strand 2
F
18 24anti-parallel
Strand 3
F
27 33anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 81first strand
Strand 2
F
65 68anti-parallel
Strand 3
F
485 490anti-parallel
Strand 4
F
468 473parallel
Strand 5
F
439 443parallel
Strand 6
F
107 111parallel
Strand 7
F
136 138parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 81first strand
Strand 2
F
65 68anti-parallel
Strand 3
F
485 490anti-parallel
Strand 4
F
520 521parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
219 222first strand
Strand 2
F
202 207parallel
Strand 3
F
172 176parallel
Strand 4
F
330 334parallel
Strand 5
F
367 370parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
285 287first strand
Strand 2
F
254 259anti-parallel
Strand 3
F
658 662parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
497 500first strand
Strand 2
F
505 509anti-parallel
Strand 3
F
620 621anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
678 683first strand
Strand 2
F
753 757parallel
Strand 3
F
710 711anti-parallel
Strand 4
F
736 742parallel
Strand 5
F
727 731anti-parallel
Strand 6
F
785 790anti-parallel
Strand 7
F
678 683anti-parallel
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