Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYE entry

There are 2 chains in PDB entry 2NYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 181ASN 322
B
 THR 181ASN 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2NYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
182 186Right-handed 310
Helix 2
2
A
187 191Right-handed 310
Helix 3
3
A
207 218Right-handed alpha
Helix 4
4
A
238 245Right-handed alpha
Helix 5
5
A
256 262Right-handed alpha
Helix 6
6
A
279 291Right-handed alpha
Helix 7
7
A
310 319Right-handed alpha
Helix 8
8
B
181 186Right-handed 310
Helix 9
9
B
187 191Right-handed 310
Helix 10
10
B
207 219Right-handed alpha
Helix 11
11
B
238 245Right-handed alpha
Helix 12
12
B
256 262Right-handed alpha
Helix 13
13
B
279 291Right-handed alpha
Helix 14
14
B
310 320Right-handed alpha
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There are 4 sheets in PDB entry 2NYE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
232 237anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
294 298parallel
Strand 3
A
304 309anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 226first strand
Strand 2
B
232 237anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
294 298parallel
Strand 3
B
304 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il