Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYF entry

There are 2 chains in PDB entry 2NYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24GLY 166
A
 ASP 170LEU 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2NYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
53 74Right-handed alpha
Helix 3
3
A
93 108Right-handed alpha
Helix 4
4
A
117 133Right-handed alpha
Helix 5
5
A
140 154Right-handed alpha
Helix 6
6
A
170 182Right-handed alpha
Helix 7
7
A
199 206Right-handed alpha
Helix 8
8
A
216 223Right-handed alpha
Helix 9
9
A
225 257Right-handed alpha
Helix 10
10
A
261 264Right-handed 310
Helix 11
11
A
265 270Right-handed alpha
Helix 12
12
A
274 288Right-handed alpha
Helix 13
13
A
313 318Right-handed alpha
Helix 14
14
A
318 342Right-handed alpha
Helix 15
15
A
352 355Right-handed 310
Helix 16
16
A
365 395Right-handed alpha
Helix 17
17
A
403 407Right-handed 310
Helix 18
18
A
418 436Right-handed alpha
Helix 19
19
A
439 443Right-handed 310
Helix 20
20
A
457 496Right-handed alpha
Helix 21
21
A
499 503Right-handed 310
Helix 22
22
A
505 520Right-handed alpha
Helix 23
23
A
532 536Right-handed 310
Helix 24
24
A
537 552Right-handed alpha
Helix 25
25
A
553 558Right-handed alpha
Helix 26
26
A
559 564Right-handed alpha
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There are 4 sheets in PDB entry 2NYF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
47 50parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
160 162anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
195 198anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
356 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il