Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYG entry

There are 6 chains in PDB entry 2NYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ILE 271
B
 PRO 12ASN 266
C
 LEU 2ILE 271
D
 LEU 2LYS 269
E
 PRO 12ILE 271
F
 ARG 13ASN 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2NYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
14 26Right-handed alpha
Helix 3
3
A
39 43Right-handed 310
Helix 4
4
A
47 61Right-handed alpha
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
87 91Right-handed 310
Helix 7
7
A
92 97Right-handed alpha
Helix 8
8
A
109 112Right-handed 310
Helix 9
9
A
113 120Right-handed alpha
Helix 10
10
A
141 147Right-handed alpha
Helix 11
11
A
159 167Right-handed alpha
Helix 12
12
A
177 181Right-handed 310
Helix 13
13
A
182 188Right-handed alpha
Helix 14
14
A
220 222Right-handed 310
Helix 15
15
A
223 235Right-handed alpha
Helix 16
16
A
252 269Right-handed alpha
Helix 17
17
B
14 26Right-handed alpha
Helix 18
18
B
39 43Right-handed 310
Helix 19
19
B
48 61Right-handed alpha
Helix 20
20
B
77 81Right-handed 310
Helix 21
21
B
87 89Right-handed 310
Helix 22
22
B
90 98Right-handed alpha
Helix 23
23
B
109 112Right-handed 310
Helix 24
24
B
113 120Right-handed alpha
Helix 25
25
B
141 147Right-handed alpha
Helix 26
26
B
159 164Right-handed alpha
Helix 27
27
B
177 182Right-handed 310
Helix 28
28
B
183 189Right-handed alpha
Helix 29
29
B
222 233Right-handed alpha
Helix 30
30
B
252 265Right-handed alpha
Helix 31
31
C
2 7Right-handed alpha
Helix 32
32
C
14 26Right-handed alpha
Helix 33
33
C
39 43Right-handed 310
Helix 34
34
C
47 61Right-handed alpha
Helix 35
35
C
77 81Right-handed 310
Helix 36
36
C
87 89Right-handed 310
Helix 37
37
C
90 98Right-handed alpha
Helix 38
38
C
109 112Right-handed 310
Helix 39
39
C
113 120Right-handed alpha
Helix 40
40
C
141 147Right-handed alpha
Helix 41
41
C
159 166Right-handed alpha
Helix 42
42
C
177 182Right-handed 310
Helix 43
43
C
183 188Right-handed alpha
Helix 44
44
C
220 222Right-handed 310
Helix 45
45
C
223 233Right-handed alpha
Helix 46
46
C
252 270Right-handed alpha
Helix 47
47
D
2 8Right-handed alpha
Helix 48
48
D
14 26Right-handed alpha
Helix 49
49
D
39 43Right-handed 310
Helix 50
50
D
47 61Right-handed alpha
Helix 51
51
D
77 81Right-handed 310
Helix 52
52
D
90 98Right-handed alpha
Helix 53
53
D
109 112Right-handed 310
Helix 54
54
D
113 120Right-handed alpha
Helix 55
55
D
141 147Right-handed alpha
Helix 56
56
D
159 167Right-handed alpha
Helix 57
57
D
177 182Right-handed 310
Helix 58
58
D
183 188Right-handed alpha
Helix 59
59
D
223 233Right-handed alpha
Helix 60
60
D
252 268Right-handed alpha
Helix 61
61
E
14 26Right-handed alpha
Helix 62
62
E
39 43Right-handed 310
Helix 63
63
E
47 61Right-handed alpha
Helix 64
64
E
77 81Right-handed 310
Helix 65
65
E
87 89Right-handed 310
Helix 66
66
E
90 98Right-handed alpha
Helix 67
67
E
109 112Right-handed 310
Helix 68
68
E
113 120Right-handed alpha
Helix 69
69
E
141 147Right-handed alpha
Helix 70
70
E
159 167Right-handed alpha
Helix 71
71
E
177 190Right-handed 310
Helix 72
72
E
223 232Right-handed alpha
Helix 73
73
E
252 270Right-handed alpha
Helix 74
74
F
14 26Right-handed alpha
Helix 75
75
F
39 43Right-handed 310
Helix 76
76
F
47 61Right-handed alpha
Helix 77
77
F
77 81Right-handed 310
Helix 78
78
F
90 98Right-handed alpha
Helix 79
79
F
109 112Right-handed 310
Helix 80
80
F
113 120Right-handed alpha
Helix 81
81
F
141 147Right-handed alpha
Helix 82
82
F
159 167Right-handed alpha
Helix 83
83
F
177 190Right-handed 310
Helix 84
84
F
220 222Right-handed 310
Helix 85
85
F
223 234Right-handed alpha
Helix 86
86
F
252 265Right-handed alpha
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There are 13 sheets in PDB entry 2NYG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
32 37parallel
Strand 5
A
170 174parallel
Strand 6
A
245 251anti-parallel
Strand 7
A
238 242anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
212 217anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
208 209anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
135 139anti-parallel
Strand 3
B
65 69anti-parallel
Strand 4
B
32 37parallel
Strand 5
B
170 174parallel
Strand 6
B
245 251anti-parallel
Strand 7
B
241 242anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 204first strand
Strand 2
B
209 217anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
135 139anti-parallel
Strand 3
C
65 69anti-parallel
Strand 4
C
32 37parallel
Strand 5
C
170 174parallel
Strand 6
C
245 251anti-parallel
Strand 7
C
238 242anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 205first strand
Strand 2
C
208 217anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 127first strand
Strand 2
D
135 139anti-parallel
Strand 3
D
65 69anti-parallel
Strand 4
D
32 37parallel
Strand 5
D
170 174parallel
Strand 6
D
245 251anti-parallel
Strand 7
D
238 242anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
196 205first strand
Strand 2
D
208 217anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
126 127first strand
Strand 2
E
135 139anti-parallel
Strand 3
E
65 69anti-parallel
Strand 4
E
32 37parallel
Strand 5
E
170 174parallel
Strand 6
E
246 251anti-parallel
Strand 7
E
238 241anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
196 205first strand
Strand 2
E
208 217anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
126 127first strand
Strand 2
F
135 139anti-parallel
Strand 3
F
65 69anti-parallel
Strand 4
F
32 37parallel
Strand 5
F
169 174parallel
Strand 6
F
246 251anti-parallel
Strand 7
F
240 241anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
196 205first strand
Strand 2
F
208 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il