Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYJ entry

There is 1 chain in PDB entry 2NYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 110GLU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2NYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 124Right-handed alpha
Helix 2
2
A
131 140Right-handed alpha
Helix 3
3
A
145 149Right-handed 310
Helix 4
4
A
156 164Right-handed alpha
Helix 5
5
A
170 182Right-handed alpha
Helix 6
6
A
186 191Right-handed alpha
Helix 7
7
A
203 211Right-handed alpha
Helix 8
8
A
213 222Right-handed alpha
Helix 9
9
A
233 237Right-handed 310
Helix 10
10
A
250 258Right-handed alpha
Helix 11
11
A
260 269Right-handed alpha
Helix 12
12
A
286 293Right-handed alpha
Helix 13
13
A
298 319Right-handed alpha
Helix 14
14
A
324 328Right-handed 310
Helix 15
15
A
335 344Right-handed alpha
Helix 16
16
A
345 356Right-handed alpha
Back to top of page
There are no sheets in PDB entry 2NYJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il