Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYK entry

There is 1 chain in PDB entry 2NYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8ILE 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2NYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
70 91Right-handed alpha
Helix 3
3
A
147 155Right-handed alpha
Helix 4
4
A
156 174Right-handed alpha
Helix 5
5
A
175 180Right-handed 310
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There are 3 sheets in PDB entry 2NYK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
21 30anti-parallel
Strand 5
A
96 106anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
122 128anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 222first strand
Strand 2
A
227 233anti-parallel
Strand 3
A
192 198anti-parallel
Strand 4
A
181 185anti-parallel
Strand 5
A
262 263anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
249 253anti-parallel
Strand 4
A
266 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il