Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYL entry

There are 10 chains in PDB entry 2NYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8ALA 589
B
 GLN 28GLU 415
C
 ASP 2ARG 294
D
 ASP 8ALA 589
E
 GLN 28GLU 415
F
 ASP 2ARG 294
G
 LEU 2LEU 2
G
 ARG 4ARG 4
H
 LEU 2LEU 2
H
 ARG 4ARG 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are168 helices in PDB entry 2NYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
25 34Right-handed alpha
Helix 3
3
A
35 40Right-handed alpha
Helix 4
4
A
43 50Right-handed alpha
Helix 5
5
A
50 57Right-handed alpha
Helix 6
6
A
62 74Right-handed alpha
Helix 7
7
A
85 88Right-handed 310
Helix 8
8
A
89 97Right-handed alpha
Helix 9
9
A
101 115Right-handed alpha
Helix 10
10
A
116 119Right-handed 310
Helix 11
11
A
120 127Right-handed alpha
Helix 12
12
A
127 137Right-handed alpha
Helix 13
13
A
140 149Right-handed alpha
Helix 14
14
A
154 158Right-handed 310
Helix 15
15
A
159 175Right-handed alpha
Helix 16
16
A
178 194Right-handed alpha
Helix 17
17
A
197 204Right-handed alpha
Helix 18
18
A
204 213Right-handed alpha
Helix 19
19
A
217 235Right-handed alpha
Helix 20
20
A
236 241Right-handed alpha
Helix 21
21
A
244 254Right-handed alpha
Helix 22
22
A
256 266Right-handed alpha
Helix 23
23
A
266 275Right-handed alpha
Helix 24
24
A
276 282Right-handed alpha
Helix 25
25
A
282 292Right-handed alpha
Helix 26
26
A
295 304Right-handed alpha
Helix 27
27
A
305 312Right-handed alpha
Helix 28
28
A
317 325Right-handed alpha
Helix 29
29
A
325 335Right-handed alpha
Helix 30
30
A
338 349Right-handed alpha
Helix 31
31
A
352 364Right-handed alpha
Helix 32
32
A
364 375Right-handed alpha
Helix 33
33
A
377 386Right-handed alpha
Helix 34
34
A
387 392Right-handed alpha
Helix 35
35
A
396 404Right-handed alpha
Helix 36
36
A
404 412Right-handed alpha
Helix 37
37
A
416 425Right-handed alpha
Helix 38
38
A
426 435Right-handed alpha
Helix 39
39
A
435 443Right-handed alpha
Helix 40
40
A
443 450Right-handed alpha
Helix 41
41
A
451 453Right-handed 310
Helix 42
42
A
455 482Right-handed alpha
Helix 43
43
A
482 489Right-handed alpha
Helix 44
44
A
494 509Right-handed alpha
Helix 45
45
A
510 512Right-handed 310
Helix 46
46
A
513 521Right-handed alpha
Helix 47
47
A
521 528Right-handed alpha
Helix 48
48
A
533 545Right-handed alpha
Helix 49
49
A
552 559Right-handed alpha
Helix 50
50
A
559 564Right-handed alpha
Helix 51
51
A
572 581Right-handed alpha
Helix 52
52
B
38 43Right-handed alpha
Helix 53
53
B
58 69Right-handed alpha
Helix 54
54
B
83 90Right-handed alpha
Helix 55
55
B
109 113Right-handed 310
Helix 56
56
B
120 136Right-handed alpha
Helix 57
57
B
150 160Right-handed alpha
Helix 58
58
B
166 181Right-handed alpha
Helix 59
59
B
186 203Right-handed alpha
Helix 60
60
B
210 223Right-handed alpha
Helix 61
61
B
230 240Right-handed alpha
Helix 62
62
B
240 245Right-handed alpha
Helix 63
63
B
246 252Right-handed 310
Helix 64
64
B
253 267Right-handed alpha
Helix 65
65
B
271 283Right-handed alpha
Helix 66
66
B
287 303Right-handed alpha
Helix 67
67
B
306 311Right-handed alpha
Helix 68
68
B
314 326Right-handed alpha
Helix 69
69
B
329 338Right-handed alpha
Helix 70
70
B
339 341Right-handed 310
Helix 71
71
B
342 352Right-handed alpha
Helix 72
72
B
352 365Right-handed alpha
Helix 73
73
B
375 389Right-handed alpha
Helix 74
74
B
391 413Right-handed alpha
Helix 75
75
C
6 18Right-handed alpha
Helix 76
76
C
24 41Right-handed alpha
Helix 77
77
C
61 73Right-handed alpha
Helix 78
78
C
92 107Right-handed alpha
Helix 79
79
C
120 128Right-handed alpha
Helix 80
80
C
128 138Right-handed alpha
Helix 81
81
C
141 150Right-handed alpha
Helix 82
82
C
151 153Right-handed 310
Helix 83
83
C
177 182Right-handed alpha
Helix 84
84
C
193 201Right-handed alpha
Helix 85
85
C
221 233Right-handed alpha
Helix 86
86
C
264 269Right-handed alpha
Helix 87
87
D
10 17Right-handed alpha
Helix 88
88
D
25 34Right-handed alpha
Helix 89
89
D
44 50Right-handed alpha
Helix 90
90
D
50 57Right-handed alpha
Helix 91
91
D
62 73Right-handed alpha
Helix 92
92
D
85 88Right-handed 310
Helix 93
93
D
89 97Right-handed alpha
Helix 94
94
D
101 115Right-handed alpha
Helix 95
95
D
120 127Right-handed alpha
Helix 96
96
D
127 137Right-handed alpha
Helix 97
97
D
140 148Right-handed alpha
Helix 98
98
D
149 151Right-handed 310
Helix 99
99
D
154 158Right-handed 310
Helix 100
100
D
159 175Right-handed alpha
Helix 101
101
D
178 194Right-handed alpha
Helix 102
102
D
197 204Right-handed alpha
Helix 103
103
D
204 213Right-handed alpha
Helix 104
104
D
217 235Right-handed alpha
Helix 105
105
D
236 244Right-handed alpha
Helix 106
106
D
244 252Right-handed alpha
Helix 107
107
D
256 266Right-handed alpha
Helix 108
108
D
266 275Right-handed alpha
Helix 109
109
D
276 282Right-handed alpha
Helix 110
110
D
282 292Right-handed alpha
Helix 111
111
D
295 304Right-handed alpha
Helix 112
112
D
305 312Right-handed alpha
Helix 113
113
D
317 325Right-handed alpha
Helix 114
114
D
325 334Right-handed alpha
Helix 115
115
D
338 349Right-handed alpha
Helix 116
116
D
352 375Right-handed alpha
Helix 117
117
D
377 386Right-handed alpha
Helix 118
118
D
387 392Right-handed alpha
Helix 119
119
D
396 404Right-handed alpha
Helix 120
120
D
404 412Right-handed alpha
Helix 121
121
D
416 425Right-handed alpha
Helix 122
122
D
426 435Right-handed alpha
Helix 123
123
D
435 443Right-handed alpha
Helix 124
124
D
443 450Right-handed alpha
Helix 125
125
D
451 453Right-handed 310
Helix 126
126
D
455 482Right-handed alpha
Helix 127
127
D
482 489Right-handed alpha
Helix 128
128
D
494 509Right-handed alpha
Helix 129
129
D
510 512Right-handed 310
Helix 130
130
D
513 521Right-handed alpha
Helix 131
131
D
533 545Right-handed alpha
Helix 132
132
D
552 557Right-handed alpha
Helix 133
133
D
559 564Right-handed alpha
Helix 134
134
D
572 581Right-handed alpha
Helix 135
135
E
38 43Right-handed alpha
Helix 136
136
E
58 72Right-handed alpha
Helix 137
137
E
83 90Right-handed alpha
Helix 138
138
E
109 113Right-handed 310
Helix 139
139
E
120 133Right-handed alpha
Helix 140
140
E
150 160Right-handed alpha
Helix 141
141
E
166 181Right-handed alpha
Helix 142
142
E
186 203Right-handed alpha
Helix 143
143
E
210 223Right-handed alpha
Helix 144
144
E
230 240Right-handed alpha
Helix 145
145
E
241 252Right-handed 310
Helix 146
146
E
253 268Right-handed alpha
Helix 147
147
E
271 283Right-handed alpha
Helix 148
148
E
287 303Right-handed alpha
Helix 149
149
E
306 311Right-handed alpha
Helix 150
150
E
314 326Right-handed alpha
Helix 151
151
E
329 338Right-handed alpha
Helix 152
152
E
339 341Right-handed 310
Helix 153
153
E
342 352Right-handed alpha
Helix 154
154
E
352 365Right-handed alpha
Helix 155
155
E
375 389Right-handed alpha
Helix 156
156
E
391 412Right-handed alpha
Helix 157
157
F
6 18Right-handed alpha
Helix 158
158
F
24 41Right-handed alpha
Helix 159
159
F
61 73Right-handed alpha
Helix 160
160
F
92 106Right-handed alpha
Helix 161
161
F
120 128Right-handed alpha
Helix 162
162
F
128 138Right-handed alpha
Helix 163
163
F
140 150Right-handed alpha
Helix 164
164
F
151 153Right-handed 310
Helix 165
165
F
177 182Right-handed alpha
Helix 166
166
F
193 201Right-handed alpha
Helix 167
167
F
222 233Right-handed alpha
Helix 168
168
F
264 269Right-handed alpha
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There are 8 sheets in PDB entry 2NYL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 47first strand
Strand 2
C
156 159parallel
Strand 3
C
163 165anti-parallel
Strand 4
C
236 238parallel
Strand 5
C
256 258parallel
Strand 6
C
249 251anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 114first strand
Strand 2
C
80 83parallel
Strand 3
C
52 55parallel
Strand 4
C
272 278anti-parallel
Strand 5
C
246 247parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 114first strand
Strand 2
C
80 83parallel
Strand 3
C
52 55parallel
Strand 4
C
272 278anti-parallel
Strand 5
C
286 289anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
219 220parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 47first strand
Strand 2
F
156 159parallel
Strand 3
F
163 165anti-parallel
Strand 4
F
236 239parallel
Strand 5
F
256 258parallel
Strand 6
F
249 251anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 114first strand
Strand 2
F
80 83parallel
Strand 3
F
52 55parallel
Strand 4
F
272 278anti-parallel
Strand 5
F
246 247parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 114first strand
Strand 2
F
80 83parallel
Strand 3
F
52 55parallel
Strand 4
F
272 278anti-parallel
Strand 5
F
285 289anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
202 204first strand
Strand 2
F
219 221parallel
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