Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYM entry

There are 10 chains in PDB entry 2NYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8ALA 589
B
 GLN 28GLU 415
C
 ASP 2ARG 294
D
 ASP 8ALA 589
E
 GLN 28GLU 415
F
 ASP 2ARG 294
G
 LEU 2LEU 2
G
 ARG 4ARG 4
H
 LEU 2LEU 2
H
 ARG 4ARG 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are167 helices in PDB entry 2NYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
24 34Right-handed alpha
Helix 3
3
A
34 41Right-handed alpha
Helix 4
4
A
51 57Right-handed alpha
Helix 5
5
A
62 74Right-handed alpha
Helix 6
6
A
75 80Right-handed alpha
Helix 7
7
A
82 88Right-handed 310
Helix 8
8
A
89 97Right-handed alpha
Helix 9
9
A
101 117Right-handed alpha
Helix 10
10
A
120 127Right-handed alpha
Helix 11
11
A
127 137Right-handed alpha
Helix 12
12
A
140 149Right-handed alpha
Helix 13
13
A
154 158Right-handed 310
Helix 14
14
A
159 175Right-handed alpha
Helix 15
15
A
178 194Right-handed alpha
Helix 16
16
A
197 204Right-handed alpha
Helix 17
17
A
204 213Right-handed alpha
Helix 18
18
A
217 232Right-handed alpha
Helix 19
19
A
236 238Right-handed 310
Helix 20
20
A
239 244Right-handed alpha
Helix 21
21
A
244 254Right-handed alpha
Helix 22
22
A
256 266Right-handed alpha
Helix 23
23
A
266 275Right-handed alpha
Helix 24
24
A
277 282Right-handed alpha
Helix 25
25
A
282 292Right-handed alpha
Helix 26
26
A
295 311Right-handed alpha
Helix 27
27
A
317 325Right-handed alpha
Helix 28
28
A
325 334Right-handed alpha
Helix 29
29
A
338 346Right-handed alpha
Helix 30
30
A
347 351Right-handed 310
Helix 31
31
A
352 364Right-handed alpha
Helix 32
32
A
364 374Right-handed alpha
Helix 33
33
A
377 386Right-handed alpha
Helix 34
34
A
387 392Right-handed alpha
Helix 35
35
A
396 404Right-handed alpha
Helix 36
36
A
404 412Right-handed alpha
Helix 37
37
A
416 435Right-handed alpha
Helix 38
38
A
435 443Right-handed alpha
Helix 39
39
A
443 451Right-handed alpha
Helix 40
40
A
455 482Right-handed alpha
Helix 41
41
A
494 509Right-handed alpha
Helix 42
42
A
510 512Right-handed 310
Helix 43
43
A
513 521Right-handed alpha
Helix 44
44
A
521 528Right-handed alpha
Helix 45
45
A
533 547Right-handed alpha
Helix 46
46
A
552 560Right-handed alpha
Helix 47
47
A
561 564Right-handed 310
Helix 48
48
A
572 581Right-handed alpha
Helix 49
49
B
38 43Right-handed alpha
Helix 50
50
B
58 71Right-handed alpha
Helix 51
51
B
83 93Right-handed alpha
Helix 52
52
B
109 113Right-handed 310
Helix 53
53
B
120 136Right-handed alpha
Helix 54
54
B
150 160Right-handed alpha
Helix 55
55
B
166 181Right-handed alpha
Helix 56
56
B
186 204Right-handed alpha
Helix 57
57
B
210 223Right-handed alpha
Helix 58
58
B
232 240Right-handed alpha
Helix 59
59
B
241 246Right-handed 310
Helix 60
60
B
248 252Right-handed 310
Helix 61
61
B
253 267Right-handed alpha
Helix 62
62
B
271 283Right-handed alpha
Helix 63
63
B
287 303Right-handed alpha
Helix 64
64
B
306 326Right-handed alpha
Helix 65
65
B
329 338Right-handed alpha
Helix 66
66
B
339 341Right-handed 310
Helix 67
67
B
342 352Right-handed alpha
Helix 68
68
B
352 365Right-handed alpha
Helix 69
69
B
375 389Right-handed alpha
Helix 70
70
B
391 412Right-handed alpha
Helix 71
71
C
6 19Right-handed alpha
Helix 72
72
C
24 41Right-handed alpha
Helix 73
73
C
61 73Right-handed alpha
Helix 74
74
C
92 107Right-handed alpha
Helix 75
75
C
120 128Right-handed alpha
Helix 76
76
C
128 138Right-handed alpha
Helix 77
77
C
140 151Right-handed alpha
Helix 78
78
C
176 183Right-handed alpha
Helix 79
79
C
193 199Right-handed alpha
Helix 80
80
C
222 233Right-handed alpha
Helix 81
81
C
264 269Right-handed alpha
Helix 82
82
D
10 20Right-handed alpha
Helix 83
83
D
24 34Right-handed alpha
Helix 84
84
D
34 41Right-handed alpha
Helix 85
85
D
51 57Right-handed alpha
Helix 86
86
D
62 73Right-handed alpha
Helix 87
87
D
85 88Right-handed 310
Helix 88
88
D
89 97Right-handed alpha
Helix 89
89
D
101 115Right-handed alpha
Helix 90
90
D
120 127Right-handed alpha
Helix 91
91
D
127 138Right-handed alpha
Helix 92
92
D
140 148Right-handed alpha
Helix 93
93
D
149 151Right-handed 310
Helix 94
94
D
154 158Right-handed 310
Helix 95
95
D
159 175Right-handed alpha
Helix 96
96
D
178 194Right-handed alpha
Helix 97
97
D
197 204Right-handed alpha
Helix 98
98
D
204 214Right-handed alpha
Helix 99
99
D
217 235Right-handed alpha
Helix 100
100
D
236 244Right-handed alpha
Helix 101
101
D
244 254Right-handed alpha
Helix 102
102
D
256 266Right-handed alpha
Helix 103
103
D
266 275Right-handed alpha
Helix 104
104
D
277 282Right-handed alpha
Helix 105
105
D
282 292Right-handed alpha
Helix 106
106
D
295 305Right-handed alpha
Helix 107
107
D
305 311Right-handed alpha
Helix 108
108
D
317 325Right-handed alpha
Helix 109
109
D
326 334Right-handed alpha
Helix 110
110
D
338 347Right-handed alpha
Helix 111
111
D
348 351Right-handed 310
Helix 112
112
D
352 364Right-handed alpha
Helix 113
113
D
364 374Right-handed alpha
Helix 114
114
D
377 386Right-handed alpha
Helix 115
115
D
387 392Right-handed alpha
Helix 116
116
D
396 404Right-handed alpha
Helix 117
117
D
404 412Right-handed alpha
Helix 118
118
D
416 435Right-handed alpha
Helix 119
119
D
435 443Right-handed alpha
Helix 120
120
D
443 450Right-handed alpha
Helix 121
121
D
451 453Right-handed 310
Helix 122
122
D
455 474Right-handed alpha
Helix 123
123
D
474 482Right-handed alpha
Helix 124
124
D
494 509Right-handed alpha
Helix 125
125
D
510 512Right-handed 310
Helix 126
126
D
513 521Right-handed alpha
Helix 127
127
D
521 528Right-handed alpha
Helix 128
128
D
529 531Right-handed 310
Helix 129
129
D
533 547Right-handed alpha
Helix 130
130
D
552 560Right-handed alpha
Helix 131
131
D
561 564Right-handed 310
Helix 132
132
D
572 584Right-handed alpha
Helix 133
133
E
38 43Right-handed alpha
Helix 134
134
E
58 71Right-handed alpha
Helix 135
135
E
83 93Right-handed alpha
Helix 136
136
E
109 113Right-handed 310
Helix 137
137
E
120 136Right-handed alpha
Helix 138
138
E
141 145Right-handed 310
Helix 139
139
E
150 160Right-handed alpha
Helix 140
140
E
166 181Right-handed alpha
Helix 141
141
E
186 204Right-handed alpha
Helix 142
142
E
210 223Right-handed alpha
Helix 143
143
E
230 239Right-handed alpha
Helix 144
144
E
241 246Right-handed 310
Helix 145
145
E
248 252Right-handed 310
Helix 146
146
E
253 267Right-handed alpha
Helix 147
147
E
268 270Right-handed 310
Helix 148
148
E
271 283Right-handed alpha
Helix 149
149
E
287 303Right-handed alpha
Helix 150
150
E
306 326Right-handed alpha
Helix 151
151
E
329 338Right-handed alpha
Helix 152
152
E
339 341Right-handed 310
Helix 153
153
E
342 352Right-handed alpha
Helix 154
154
E
352 365Right-handed alpha
Helix 155
155
E
375 389Right-handed alpha
Helix 156
156
E
391 412Right-handed alpha
Helix 157
157
F
6 20Right-handed alpha
Helix 158
158
F
24 41Right-handed alpha
Helix 159
159
F
61 73Right-handed alpha
Helix 160
160
F
92 106Right-handed alpha
Helix 161
161
F
120 128Right-handed alpha
Helix 162
162
F
128 138Right-handed alpha
Helix 163
163
F
140 153Right-handed alpha
Helix 164
164
F
176 183Right-handed alpha
Helix 165
165
F
193 199Right-handed alpha
Helix 166
166
F
222 233Right-handed alpha
Helix 167
167
F
264 269Right-handed alpha
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There are 6 sheets in PDB entry 2NYM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 165anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
246 251anti-parallel
Strand 7
C
272 278parallel
Strand 8
C
52 55anti-parallel
Strand 9
C
80 83parallel
Strand 10
C
111 114parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 165anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
246 251anti-parallel
Strand 7
C
272 278parallel
Strand 8
C
284 289anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 204first strand
Strand 2
C
219 221parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 48first strand
Strand 2
F
156 159parallel
Strand 3
F
163 166anti-parallel
Strand 4
F
236 239parallel
Strand 5
F
256 259parallel
Strand 6
F
246 251anti-parallel
Strand 7
F
272 278parallel
Strand 8
F
52 55anti-parallel
Strand 9
F
80 83parallel
Strand 10
F
111 114parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 48first strand
Strand 2
F
156 159parallel
Strand 3
F
163 166anti-parallel
Strand 4
F
236 239parallel
Strand 5
F
256 259parallel
Strand 6
F
246 251anti-parallel
Strand 7
F
272 278parallel
Strand 8
F
284 289anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
202 204first strand
Strand 2
F
219 221parallel
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