Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYT entry

There are 4 chains in PDB entry 2NYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 36LYS 224
B
 GLY 35LYS 224
C
 MET 40LYS 224
D
 MET 40LYS 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2NYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 54Right-handed alpha
Helix 2
2
A
98 107Right-handed alpha
Helix 3
3
A
128 142Right-handed alpha
Helix 4
4
A
159 172Right-handed alpha
Helix 5
5
A
180 192Right-handed alpha
Helix 6
6
A
207 224Right-handed alpha
Helix 7
7
B
47 52Right-handed alpha
Helix 8
8
B
98 107Right-handed alpha
Helix 9
9
B
128 142Right-handed alpha
Helix 10
10
B
159 172Right-handed alpha
Helix 11
11
B
180 191Right-handed alpha
Helix 12
12
B
207 224Right-handed alpha
Helix 13
13
C
47 54Right-handed alpha
Helix 14
14
C
98 107Right-handed alpha
Helix 15
15
C
128 140Right-handed alpha
Helix 16
16
C
159 172Right-handed alpha
Helix 17
17
C
180 192Right-handed alpha
Helix 18
18
C
207 223Right-handed alpha
Helix 19
19
D
47 52Right-handed alpha
Helix 20
20
D
98 107Right-handed alpha
Helix 21
21
D
128 142Right-handed alpha
Helix 22
22
D
159 172Right-handed alpha
Helix 23
23
D
180 191Right-handed alpha
Helix 24
24
D
207 224Right-handed alpha
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There are 4 sheets in PDB entry 2NYT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
145 153parallel
Strand 3
A
116 125parallel
Strand 4
A
68 77anti-parallel
Strand 5
A
83 92anti-parallel
Strand 6
B
83 95anti-parallel
Strand 7
B
65 77anti-parallel
Strand 8
B
59 62anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
145 153parallel
Strand 3
A
116 125parallel
Strand 4
A
68 77anti-parallel
Strand 5
A
83 92anti-parallel
Strand 6
B
83 95anti-parallel
Strand 7
B
65 77anti-parallel
Strand 8
B
116 125anti-parallel
Strand 9
B
145 153parallel
Strand 10
B
175 178parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 178first strand
Strand 2
C
145 153parallel
Strand 3
C
116 125parallel
Strand 4
C
68 77anti-parallel
Strand 5
C
83 92anti-parallel
Strand 6
D
83 95anti-parallel
Strand 7
D
65 77anti-parallel
Strand 8
D
59 62anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 178first strand
Strand 2
C
145 153parallel
Strand 3
C
116 125parallel
Strand 4
C
68 77anti-parallel
Strand 5
C
83 92anti-parallel
Strand 6
D
83 95anti-parallel
Strand 7
D
65 77anti-parallel
Strand 8
D
116 123anti-parallel
Strand 9
D
145 151parallel
Strand 10
D
175 178parallel
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