Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYV entry

There is 1 chain in PDB entry 2NYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2NYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
34 38Right-handed 310
Helix 3
3
A
41 46Right-handed 310
Helix 4
4
A
49 59Right-handed alpha
Helix 5
5
A
60 62Right-handed 310
Helix 6
6
A
63 64Right-handed 310
Helix 7
7
A
65 77Right-handed alpha
Helix 8
8
A
87 98Right-handed alpha
Helix 9
9
A
109 120Right-handed alpha
Helix 10
10
A
122 126Right-handed 310
Helix 11
11
A
142 153Right-handed alpha
Helix 12
12
A
155 157Right-handed 310
Helix 13
13
A
165 176Right-handed alpha
Helix 14
14
A
202 210Right-handed alpha
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There are 3 sheets in PDB entry 2NYV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
214 215parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
101 105parallel
Strand 3
A
5 8parallel
Strand 4
A
159 163parallel
Strand 5
A
178 182parallel
Strand 6
A
196 198parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
83 84anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il