Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYX entry

There are 4 chains in PDB entry 2NYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7GLU 152
B
 ALA 10ARG 156
C
 PRO 7GLU 152
D
 ALA 10ARG 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2NYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 40Right-handed alpha
Helix 2
2
A
44 58Right-handed alpha
Helix 3
3
A
62 70Right-handed alpha
Helix 4
4
A
72 86Right-handed alpha
Helix 5
5
A
106 130Right-handed alpha
Helix 6
6
A
132 150Right-handed alpha
Helix 7
7
B
15 25Right-handed alpha
Helix 8
8
B
25 40Right-handed alpha
Helix 9
9
B
44 58Right-handed alpha
Helix 10
10
B
62 70Right-handed alpha
Helix 11
11
B
72 86Right-handed alpha
Helix 12
12
B
106 129Right-handed alpha
Helix 13
13
B
130 131Right-handed 310
Helix 14
14
B
132 136Right-handed 310
Helix 15
15
B
138 151Right-handed alpha
Helix 16
16
C
13 40Right-handed alpha
Helix 17
17
C
44 58Right-handed alpha
Helix 18
18
C
62 70Right-handed alpha
Helix 19
19
C
73 86Right-handed alpha
Helix 20
20
C
106 130Right-handed alpha
Helix 21
21
C
132 150Right-handed alpha
Helix 22
22
D
13 25Right-handed alpha
Helix 23
23
D
25 38Right-handed alpha
Helix 24
24
D
44 58Right-handed alpha
Helix 25
25
D
62 70Right-handed alpha
Helix 26
26
D
72 86Right-handed alpha
Helix 27
27
D
106 130Right-handed alpha
Helix 28
28
D
131 136Right-handed 310
Helix 29
29
D
138 150Right-handed alpha
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There are 4 sheets in PDB entry 2NYX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
89 93anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
89 92anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
101 105anti-parallel
Strand 3
C
89 93anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
102 105anti-parallel
Strand 3
D
89 92anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il