Analysis of interatomic Contacts of Structural Units in PDB entry:
2NYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NYY entry

There are 3 chains in PDB entry 2NYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PRO 1295
C
 GLU 1GLY 216
D
 VAL 2PRO 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2NYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 100Right-handed alpha
Helix 2
2
A
103 114Right-handed alpha
Helix 3
3
A
130 132Right-handed 310
Helix 4
4
A
200 204Right-handed 310
Helix 5
5
A
216 233Right-handed alpha
Helix 6
6
A
259 267Right-handed alpha
Helix 7
7
A
269 274Right-handed 310
Helix 8
8
A
275 300Right-handed alpha
Helix 9
9
A
309 322Right-handed alpha
Helix 10
10
A
334 347Right-handed alpha
Helix 11
11
A
350 359Right-handed alpha
Helix 12
12
A
401 405Right-handed 310
Helix 13
13
A
409 413Right-handed 310
Helix 14
14
A
460 462Right-handed 310
Helix 15
15
A
467 471Right-handed 310
Helix 16
16
A
495 504Right-handed alpha
Helix 17
17
A
549 556Right-handed alpha
Helix 18
18
A
588 594Right-handed alpha
Helix 19
19
A
602 619Right-handed alpha
Helix 20
20
A
636 642Right-handed alpha
Helix 21
21
A
651 660Right-handed alpha
Helix 22
22
A
661 664Right-handed 310
Helix 23
23
A
687 721Right-handed alpha
Helix 24
24
A
721 753Right-handed alpha
Helix 25
25
A
765 800Right-handed alpha
Helix 26
26
A
800 826Right-handed alpha
Helix 27
27
A
833 846Right-handed alpha
Helix 28
28
A
852 856Right-handed 310
Helix 29
29
A
859 872Right-handed alpha
Helix 30
30
A
873 877Right-handed 310
Helix 31
31
A
930 933Right-handed 310
Helix 32
32
A
954 960Right-handed 310
Helix 33
33
A
1080 1092Right-handed alpha
Helix 34
34
A
1212 1214Right-handed 310
Helix 35
35
A
1265 1272Right-handed alpha
Helix 36
36
C
83 87Right-handed 310
Helix 37
37
C
125 130Right-handed alpha
Helix 38
38
C
187 191Right-handed alpha
Helix 39
39
D
28 32Right-handed 310
Helix 40
40
D
74 76Right-handed 310
Helix 41
41
D
87 91Right-handed 310
Helix 42
42
D
161 163Right-handed 310
Helix 43
43
D
206 209Right-handed 310
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There are 26 sheets in PDB entry 2NYY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 45anti-parallel
Strand 6
A
151 154parallel
Strand 7
A
184 187parallel
Strand 8
A
164 166anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
302 303parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
414 415anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 458first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
542 545parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
679 681parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 890first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
1066 1075anti-parallel
Strand 4
A
914 917anti-parallel
Strand 5
A
904 906anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 890first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
1066 1075anti-parallel
Strand 4
A
940 948anti-parallel
Strand 5
A
1015 1022anti-parallel
Strand 6
A
1026 1031anti-parallel
Strand 7
A
1034 1040anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 900first strand
Strand 2
A
924 928anti-parallel
Strand 3
A
1052 1058anti-parallel
Strand 4
A
962 969anti-parallel
Strand 5
A
972 979anti-parallel
Strand 6
A
982 988anti-parallel
Strand 7
A
994 1000anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1115first strand
Strand 2
A
1282 1285anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1122 1125first strand
Strand 2
A
1134 1137anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1142 1145first strand
Strand 2
A
1149 1152anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1164first strand
Strand 2
A
1179 1186anti-parallel
Strand 3
A
1220 1223anti-parallel
Strand 4
A
1237 1240anti-parallel
Strand 5
A
1246 1252anti-parallel
Strand 6
A
1261 1264anti-parallel
Strand 7
A
1203 1205anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1164first strand
Strand 2
A
1179 1186anti-parallel
Strand 3
A
1189 1194anti-parallel
Strand 4
A
1207 1210anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1227first strand
Strand 2
A
1231 1232anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
74 79anti-parallel
Strand 4
C
66 71anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
106 110parallel
Strand 3
C
88 94anti-parallel
Strand 4
C
37 42anti-parallel
Strand 5
C
49 53anti-parallel
Strand 6
C
57 58anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
34 35anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 122first strand
Strand 2
C
133 143anti-parallel
Strand 3
C
177 186anti-parallel
Strand 4
C
163 167anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 158first strand
Strand 2
C
149 154anti-parallel
Strand 3
C
195 201anti-parallel
Strand 4
C
209 214anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
17 25anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
113 116parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
113 116parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
105 108anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 129first strand
Strand 2
D
141 150anti-parallel
Strand 3
D
181 189anti-parallel
Strand 4
D
168 170anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 129first strand
Strand 2
D
141 150anti-parallel
Strand 3
D
181 189anti-parallel
Strand 4
D
174 175anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
156 159first strand
Strand 2
D
199 205anti-parallel
Strand 3
D
210 216anti-parallel
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