Analysis of interatomic Contacts of Structural Units in PDB entry:
2NZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NZJ entry

There are 4 chains in PDB entry 2NZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ARG 248
B
 MET 0ARG 248
C
 MET 0ARG 247
D
 MET 0ARG 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 2NZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
92 102Right-handed alpha
Helix 2
2
A
144 150Right-handed alpha
Helix 3
3
A
165 182Right-handed alpha
Helix 4
4
A
206 218Right-handed alpha
Helix 5
5
A
231 248Right-handed alpha
Helix 6
6
B
92 102Right-handed alpha
Helix 7
7
B
144 150Right-handed alpha
Helix 8
8
B
165 182Right-handed alpha
Helix 9
9
B
199 203Right-handed 310
Helix 10
10
B
206 218Right-handed alpha
Helix 11
11
B
231 248Right-handed alpha
Helix 12
12
C
92 102Right-handed alpha
Helix 13
13
C
144 149Right-handed alpha
Helix 14
14
C
165 181Right-handed alpha
Helix 15
15
C
199 203Right-handed 310
Helix 16
16
C
206 216Right-handed alpha
Helix 17
17
C
231 246Right-handed alpha
Helix 18
18
D
92 102Right-handed alpha
Helix 19
19
D
144 153Right-handed alpha
Helix 20
20
D
165 181Right-handed alpha
Helix 21
21
D
199 203Right-handed 310
Helix 22
22
D
206 217Right-handed alpha
Helix 23
23
D
231 246Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2NZJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 123first strand
Strand 2
A
126 133anti-parallel
Strand 3
A
80 86parallel
Strand 4
A
156 162parallel
Strand 5
A
190 195parallel
Strand 6
A
220 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 123first strand
Strand 2
B
126 133anti-parallel
Strand 3
B
80 86parallel
Strand 4
B
156 162parallel
Strand 5
B
190 195parallel
Strand 6
B
220 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 123first strand
Strand 2
C
126 133anti-parallel
Strand 3
C
80 86parallel
Strand 4
C
156 162parallel
Strand 5
C
190 195parallel
Strand 6
C
220 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 123first strand
Strand 2
D
126 133anti-parallel
Strand 3
D
80 86parallel
Strand 4
D
156 162parallel
Strand 5
D
190 195parallel
Strand 6
D
220 223parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il