Analysis of interatomic Contacts of Structural Units in PDB entry:
2NZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NZU entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 2NZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 LYS 58LYS 332
L
 ALA 2LYS 45
L
 ILE 47GLU 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2NZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
G
72 89Right-handed alpha
Helix 2
2
G
101 114Right-handed alpha
Helix 3
3
G
128 138Right-handed alpha
Helix 4
4
G
160 175Right-handed alpha
Helix 5
5
G
189 194Right-handed alpha
Helix 6
6
G
195 207Right-handed alpha
Helix 7
7
G
212 214Right-handed 310
Helix 8
8
G
222 235Right-handed alpha
Helix 9
9
G
247 260Right-handed alpha
Helix 10
10
G
277 282Right-handed 310
Helix 11
11
G
293 310Right-handed alpha
Helix 12
12
L
15 28Right-handed alpha
Helix 13
13
L
46 53Right-handed alpha
Helix 14
14
L
69 84Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 2NZU. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
92 97first strand
Strand 2
G
62 67parallel
Strand 3
G
119 122parallel
Strand 4
G
142 145parallel
Strand 5
G
156 159parallel
Strand 6
G
318 321parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
216 218first strand
Strand 2
G
180 184parallel
Strand 3
G
242 245parallel
Strand 4
G
270 275parallel
Strand 5
G
288 291parallel
Strand 6
G
324 326anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
40 43first strand
Strand 2
L
32 37anti-parallel
Strand 3
L
60 66anti-parallel
Strand 4
L
3 8anti-parallel
Strand 5
L
87 88anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il