Analysis of interatomic Contacts of Structural Units in PDB entry:
2O0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O0M entry

There is 1 chain in PDB entry 2O0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 95LYS 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2O0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 106Right-handed alpha
Helix 2
2
A
121 139Right-handed alpha
Helix 3
3
A
151 160Right-handed alpha
Helix 4
4
A
183 186Right-handed 310
Helix 5
5
A
187 200Right-handed alpha
Helix 6
6
A
213 222Right-handed alpha
Helix 7
7
A
223 235Right-handed alpha
Helix 8
8
A
246 253Right-handed alpha
Helix 9
9
A
256 266Right-handed alpha
Helix 10
10
A
293 300Right-handed 310
Helix 11
11
A
309 311Right-handed 310
Helix 12
12
A
312 321Right-handed alpha
Helix 13
13
A
333 340Right-handed alpha
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There are 2 sheets in PDB entry 2O0M. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
328 332parallel
Strand 3
A
302 306parallel
Strand 4
A
238 241parallel
Strand 5
A
142 148parallel
Strand 6
A
169 175parallel
Strand 7
A
202 203parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
270 272anti-parallel
Strand 3
A
275 277anti-parallel
Strand 4
A
283 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il