Analysis of interatomic Contacts of Structural Units in PDB entry:
2O0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O0Y entry

There are 4 chains in PDB entry 2O0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18LEU 259
B
 ALA 17ASP 260
C
 THR 6ASP 260
D
 SER 8ASP 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 2O0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
51 65Right-handed alpha
Helix 4
4
A
79 94Right-handed alpha
Helix 5
5
A
96 111Right-handed alpha
Helix 6
6
A
151 158Right-handed alpha
Helix 7
7
A
159 163Right-handed 310
Helix 8
8
A
164 172Right-handed alpha
Helix 9
9
A
175 177Right-handed 310
Helix 10
10
A
178 193Right-handed alpha
Helix 11
11
A
230 232Right-handed 310
Helix 12
12
A
236 255Right-handed alpha
Helix 13
13
B
17 30Right-handed alpha
Helix 14
14
B
40 49Right-handed alpha
Helix 15
15
B
51 65Right-handed alpha
Helix 16
16
B
80 84Right-handed 310
Helix 17
17
B
85 93Right-handed alpha
Helix 18
18
B
96 111Right-handed alpha
Helix 19
19
B
151 158Right-handed alpha
Helix 20
20
B
159 163Right-handed 310
Helix 21
21
B
164 172Right-handed alpha
Helix 22
22
B
177 193Right-handed alpha
Helix 23
23
B
230 232Right-handed 310
Helix 24
24
B
236 255Right-handed alpha
Helix 25
25
C
19 31Right-handed alpha
Helix 26
26
C
40 49Right-handed alpha
Helix 27
27
C
51 65Right-handed alpha
Helix 28
28
C
79 94Right-handed alpha
Helix 29
29
C
96 111Right-handed alpha
Helix 30
30
C
151 158Right-handed alpha
Helix 31
31
C
159 163Right-handed 310
Helix 32
32
C
164 172Right-handed alpha
Helix 33
33
C
175 177Right-handed 310
Helix 34
34
C
178 193Right-handed alpha
Helix 35
35
C
230 232Right-handed 310
Helix 36
36
C
236 255Right-handed alpha
Helix 37
37
D
18 30Right-handed alpha
Helix 38
38
D
40 49Right-handed alpha
Helix 39
39
D
51 65Right-handed alpha
Helix 40
40
D
80 84Right-handed 310
Helix 41
41
D
85 93Right-handed alpha
Helix 42
42
D
96 111Right-handed alpha
Helix 43
43
D
151 158Right-handed alpha
Helix 44
44
D
159 163Right-handed 310
Helix 45
45
D
164 172Right-handed alpha
Helix 46
46
D
175 177Right-handed 310
Helix 47
47
D
178 193Right-handed alpha
Helix 48
48
D
230 232Right-handed 310
Helix 49
49
D
236 255Right-handed alpha
Helix 50
50
D
256 260Right-handed 310
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There are 8 sheets in PDB entry 2O0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
76 78anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
123 130anti-parallel
Strand 3
A
113 120anti-parallel
Strand 4
A
219 228anti-parallel
Strand 5
A
205 213anti-parallel
Strand 6
A
195 198anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
76 78anti-parallel
Strand 3
B
68 70anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
123 130anti-parallel
Strand 3
B
113 120anti-parallel
Strand 4
B
219 228anti-parallel
Strand 5
B
205 213anti-parallel
Strand 6
B
195 198anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
76 78anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 147first strand
Strand 2
C
123 130anti-parallel
Strand 3
C
113 120anti-parallel
Strand 4
C
219 228anti-parallel
Strand 5
C
205 213anti-parallel
Strand 6
C
195 198anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 39first strand
Strand 2
D
76 78anti-parallel
Strand 3
D
68 70anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 147first strand
Strand 2
D
123 130anti-parallel
Strand 3
D
113 120anti-parallel
Strand 4
D
219 228anti-parallel
Strand 5
D
205 213anti-parallel
Strand 6
D
195 198anti-parallel
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