Analysis of interatomic Contacts of Structural Units in PDB entry:
2O16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O16 entry

There are 2 chains in PDB entry 2O16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18GLU 158
B
 LEU 19PRO 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2O16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 26Right-handed 310
Helix 2
2
A
39 51Right-handed alpha
Helix 3
3
A
70 81Right-handed alpha
Helix 4
4
A
95 100Right-handed alpha
Helix 5
5
A
112 123Right-handed alpha
Helix 6
6
A
141 158Right-handed alpha
Helix 7
7
B
22 27Right-handed alpha
Helix 8
8
B
39 51Right-handed alpha
Helix 9
9
B
70 80Right-handed alpha
Helix 10
10
B
90 94Right-handed 310
Helix 11
11
B
95 99Right-handed 310
Helix 12
12
B
112 123Right-handed alpha
Helix 13
13
B
144 159Right-handed alpha
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There are 5 sheets in PDB entry 2O16. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
128 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
64 69anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
B
104 106anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
135 141anti-parallel
Strand 3
B
127 132anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
54 58parallel
Strand 3
B
64 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il