Analysis of interatomic Contacts of Structural Units in PDB entry:
2O1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O1M entry

There are 2 chains in PDB entry 2O1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 14TYR 245
B
 LYS 14ASP 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2O1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 53Right-handed alpha
Helix 2
2
A
64 66Right-handed 310
Helix 3
3
A
67 74Right-handed alpha
Helix 4
4
A
87 94Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
134 147Right-handed alpha
Helix 7
7
A
161 170Right-handed alpha
Helix 8
8
A
178 189Right-handed alpha
Helix 9
9
A
213 230Right-handed alpha
Helix 10
10
A
231 241Right-handed alpha
Helix 11
11
B
40 53Right-handed alpha
Helix 12
12
B
64 66Right-handed 310
Helix 13
13
B
67 73Right-handed alpha
Helix 14
14
B
74 76Right-handed 310
Helix 15
15
B
87 94Right-handed alpha
Helix 16
16
B
119 123Right-handed 310
Helix 17
17
B
136 145Right-handed alpha
Helix 18
18
B
161 170Right-handed alpha
Helix 19
19
B
178 189Right-handed alpha
Helix 20
20
B
210 212Right-handed 310
Helix 21
21
B
213 230Right-handed alpha
Helix 22
22
B
231 241Right-handed alpha
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There are 8 sheets in PDB entry 2O1M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
16 22parallel
Strand 3
A
79 84parallel
Strand 4
A
193 209anti-parallel
Strand 5
A
95 96anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
16 22parallel
Strand 3
A
79 84parallel
Strand 4
A
193 209anti-parallel
Strand 5
A
102 111anti-parallel
Strand 6
A
175 177anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
30 32anti-parallel
Strand 3
A
38 39anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
152 155parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 62first strand
Strand 2
B
16 22parallel
Strand 3
B
79 80parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
30 32anti-parallel
Strand 3
B
38 39anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
208 209anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
127 129parallel
Strand 3
B
174 177parallel
Strand 4
B
102 111anti-parallel
Strand 5
B
193 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il