Analysis of interatomic Contacts of Structural Units in PDB entry:
2O2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O2J entry

There are 2 chains in PDB entry 2O2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 29PHE 404
B
 TYR 29PHE 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2O2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 33Right-handed 310
Helix 2
2
A
34 51Right-handed alpha
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
92 95Right-handed 310
Helix 6
6
A
98 115Right-handed alpha
Helix 7
7
A
127 141Right-handed alpha
Helix 8
8
A
150 155Right-handed alpha
Helix 9
9
A
158 166Right-handed alpha
Helix 10
10
A
179 195Right-handed alpha
Helix 11
11
A
211 218Right-handed alpha
Helix 12
12
A
220 235Right-handed alpha
Helix 13
13
A
251 259Right-handed 310
Helix 14
14
A
342 357Right-handed alpha
Helix 15
15
A
362 380Right-handed alpha
Helix 16
16
A
395 404Right-handed alpha
Helix 17
17
B
31 33Right-handed 310
Helix 18
18
B
34 50Right-handed alpha
Helix 19
19
B
52 63Right-handed alpha
Helix 20
20
B
78 82Right-handed 310
Helix 21
21
B
92 95Right-handed 310
Helix 22
22
B
99 116Right-handed alpha
Helix 23
23
B
127 140Right-handed alpha
Helix 24
24
B
150 155Right-handed alpha
Helix 25
25
B
156 166Right-handed alpha
Helix 26
26
B
179 194Right-handed alpha
Helix 27
27
B
211 219Right-handed alpha
Helix 28
28
B
220 235Right-handed alpha
Helix 29
29
B
251 259Right-handed 310
Helix 30
30
B
342 358Right-handed alpha
Helix 31
31
B
362 380Right-handed alpha
Helix 32
32
B
396 404Right-handed alpha
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There are 4 sheets in PDB entry 2O2J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
384 388parallel
Strand 4
A
240 244parallel
Strand 5
A
265 271parallel
Strand 6
A
337 341parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
143 149parallel
Strand 3
A
119 124parallel
Strand 4
A
198 200parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
86 90anti-parallel
Strand 3
B
384 388parallel
Strand 4
B
240 244parallel
Strand 5
B
265 271parallel
Strand 6
B
337 341parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
143 149parallel
Strand 3
B
119 123parallel
Strand 4
B
198 200parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il