Analysis of interatomic Contacts of Structural Units in PDB entry:
2O2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O2T entry

There are 2 chains in PDB entry 2O2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 119VAL 231
B
 GLU 121VAL 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2O2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
119 131Right-handed alpha
Helix 2
2
A
174 180Right-handed alpha
Helix 3
3
A
201 212Right-handed alpha
Helix 4
4
A
225 230Right-handed 310
Helix 5
5
B
121 131Right-handed alpha
Helix 6
6
B
174 180Right-handed alpha
Helix 7
7
B
201 212Right-handed alpha
Helix 8
8
B
225 230Right-handed 310
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There are 4 sheets in PDB entry 2O2T. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 141first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
187 191anti-parallel
Strand 4
A
163 167anti-parallel
Strand 5
A
152 156anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 141first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
187 191anti-parallel
Strand 4
A
194 195anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 141first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
187 191anti-parallel
Strand 4
B
194 195anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
163 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il