Analysis of interatomic Contacts of Structural Units in PDB entry:
2O34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O34 entry

There are 2 chains in PDB entry 2O34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0VAL 248
B
 ALA 19ALA 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2O34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 66Right-handed alpha
Helix 2
2
A
83 97Right-handed alpha
Helix 3
3
A
99 102Right-handed 310
Helix 4
4
A
103 117Right-handed alpha
Helix 5
5
A
118 120Right-handed 310
Helix 6
6
A
191 206Right-handed alpha
Helix 7
7
A
210 222Right-handed alpha
Helix 8
8
A
223 225Right-handed 310
Helix 9
9
B
44 66Right-handed alpha
Helix 10
10
B
83 97Right-handed alpha
Helix 11
11
B
99 102Right-handed 310
Helix 12
12
B
103 117Right-handed alpha
Helix 13
13
B
118 120Right-handed 310
Helix 14
14
B
191 206Right-handed alpha
Helix 15
15
B
210 222Right-handed alpha
Helix 16
16
B
223 225Right-handed 310
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There are 4 sheets in PDB entry 2O34. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
246 247anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 31first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
130 134anti-parallel
Strand 5
A
164 168anti-parallel
Strand 6
A
184 189anti-parallel
Strand 7
A
227 234anti-parallel
Strand 8
A
237 242anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 31first strand
Strand 2
B
34 40anti-parallel
Strand 3
B
123 127anti-parallel
Strand 4
B
130 134anti-parallel
Strand 5
B
164 168anti-parallel
Strand 6
B
184 189anti-parallel
Strand 7
B
227 234anti-parallel
Strand 8
B
237 242anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 144first strand
Strand 2
B
153 157anti-parallel
Strand 3
B
246 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il