Analysis of interatomic Contacts of Structural Units in PDB entry:
2O62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O62 entry

There are 2 chains in PDB entry 2O62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 269
B
 MSE 1VAL 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 2O62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 10Right-handed alpha
Helix 2
2
A
138 142Right-handed 310
Helix 3
3
B
3 10Right-handed alpha
Helix 4
4
B
138 143Right-handed alpha
Helix 5
5
B
204 207Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2O62. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
28 41anti-parallel
Strand 4
A
13 22anti-parallel
Strand 5
A
116 126anti-parallel
Strand 6
A
102 110anti-parallel
Strand 7
A
92 99anti-parallel
Strand 8
A
78 80anti-parallel
Strand 9
A
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 154first strand
Strand 2
A
161 171anti-parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
186 195anti-parallel
Strand 5
A
198 201anti-parallel
Strand 6
A
209 213anti-parallel
Strand 7
A
218 223anti-parallel
Strand 8
A
232 241anti-parallel
Strand 9
A
244 252anti-parallel
Strand 10
A
258 268anti-parallel
Strand 11
A
144 154anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
46 53anti-parallel
Strand 3
B
28 41anti-parallel
Strand 4
B
13 22anti-parallel
Strand 5
B
116 126anti-parallel
Strand 6
B
102 110anti-parallel
Strand 7
B
92 99anti-parallel
Strand 8
B
78 81anti-parallel
Strand 9
B
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 154first strand
Strand 2
B
161 171anti-parallel
Strand 3
B
177 182anti-parallel
Strand 4
B
187 195anti-parallel
Strand 5
B
198 201anti-parallel
Strand 6
B
209 213anti-parallel
Strand 7
B
218 223anti-parallel
Strand 8
B
232 241anti-parallel
Strand 9
B
244 252anti-parallel
Strand 10
B
258 268anti-parallel
Strand 11
B
144 154anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il