Analysis of interatomic Contacts of Structural Units in PDB entry:
2O6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O6V entry

There are 10 chains in PDB entry 2O6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 75
B
 MET 101GLY 147
B
 GLN 149GLY 176
C
 MET 201GLY 276
D
 MET 301GLY 376
E
 MET 401GLY 475
F
 MET 501GLY 547
F
 GLN 549GLY 576
G
 MET 601GLY 676
H
 GLN 702GLY 776
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2O6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 35Right-handed alpha
Helix 2
2
A
37 39Right-handed 310
Helix 3
3
A
56 60Right-handed 310
Helix 4
4
B
122 135Right-handed alpha
Helix 5
5
B
137 139Right-handed 310
Helix 6
6
C
222 235Right-handed alpha
Helix 7
7
C
237 239Right-handed 310
Helix 8
8
C
255 260Right-handed 310
Helix 9
9
D
322 335Right-handed alpha
Helix 10
10
D
337 339Right-handed 310
Helix 11
11
D
356 360Right-handed 310
Helix 12
12
E
422 435Right-handed alpha
Helix 13
13
E
437 439Right-handed 310
Helix 14
14
E
456 460Right-handed 310
Helix 15
15
F
522 535Right-handed alpha
Helix 16
16
F
537 539Right-handed 310
Helix 17
17
F
556 560Right-handed 310
Helix 18
18
G
622 635Right-handed alpha
Helix 19
19
G
637 639Right-handed 310
Helix 20
20
G
655 660Right-handed 310
Helix 21
21
H
722 735Right-handed alpha
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There are 8 sheets in PDB entry 2O6V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
48 49anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
102 107anti-parallel
Strand 3
B
166 171parallel
Strand 4
B
141 145anti-parallel
Strand 5
B
148 149anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 216first strand
Strand 2
C
202 207anti-parallel
Strand 3
C
266 271parallel
Strand 4
C
241 245anti-parallel
Strand 5
C
248 249anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
312 316first strand
Strand 2
D
302 307anti-parallel
Strand 3
D
366 371parallel
Strand 4
D
341 345anti-parallel
Strand 5
D
348 349anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
412 416first strand
Strand 2
E
402 407anti-parallel
Strand 3
E
466 471parallel
Strand 4
E
441 445anti-parallel
Strand 5
E
448 449anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
512 516first strand
Strand 2
F
502 507anti-parallel
Strand 3
F
566 571parallel
Strand 4
F
541 545anti-parallel
Strand 5
F
548 549anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
612 616first strand
Strand 2
G
602 607anti-parallel
Strand 3
G
666 671parallel
Strand 4
G
641 645anti-parallel
Strand 5
G
648 649anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
712 715first strand
Strand 2
H
703 707anti-parallel
Strand 3
H
766 771parallel
Strand 4
H
741 745anti-parallel
Strand 5
H
748 749anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il