Analysis of interatomic Contacts of Structural Units in PDB entry:
2O8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O8V entry

There are 2 chains in PDB entry 2O8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 244
B
 SER 1ALA 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2O8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
13 21Right-handed alpha
Helix 3
3
A
21 29Right-handed alpha
Helix 4
4
A
32 42Right-handed alpha
Helix 5
5
A
57 69Right-handed alpha
Helix 6
6
A
83 97Right-handed alpha
Helix 7
7
A
109 117Right-handed alpha
Helix 8
8
A
119 122Right-handed 310
Helix 9
9
A
123 136Right-handed alpha
Helix 10
10
A
136 147Right-handed alpha
Helix 11
11
A
181 184Right-handed 310
Helix 12
12
A
186 197Right-handed alpha
Helix 13
13
B
11 16Right-handed alpha
Helix 14
14
B
32 38Right-handed alpha
Helix 15
15
B
38 49Right-handed alpha
Helix 16
16
B
67 71Right-handed 310
Helix 17
17
B
95 108Right-handed alpha
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There are 2 sheets in PDB entry 2O8V. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
73 76parallel
Strand 3
A
48 51parallel
Strand 4
A
151 153parallel
Strand 5
A
177 179parallel
Strand 6
A
170 172anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
53 59parallel
Strand 3
B
22 28parallel
Strand 4
B
77 82anti-parallel
Strand 5
B
85 91anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il