Analysis of interatomic Contacts of Structural Units in PDB entry:
2OAE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2OAE entry

There are 2 chains in PDB entry 2OAE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 38	ARG 767
B	ARG 38	ARG 767

There are 40 helices in PDB entry 2OAE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	42	48	Right-handed alpha
Helix 2	2	A	91	95	Right-handed 310
Helix 3	3	A	198	205	Right-handed alpha
Helix 4	4	A	216	218	Right-handed 310
Helix 5	5	A	272	277	Right-handed 310
Helix 6	6	A	288	293	Right-handed alpha
Helix 7	7	A	338	342	Right-handed 310
Helix 8	8	A	422	426	Right-handed 310
Helix 9	9	A	498	506	Right-handed alpha
Helix 10	10	A	563	571	Right-handed alpha
Helix 11	11	A	588	593	Right-handed alpha
Helix 12	12	A	594	596	Right-handed 310
Helix 13	13	A	601	617	Right-handed alpha
Helix 14	14	A	631	642	Right-handed alpha
Helix 15	15	A	659	663	Right-handed 310
Helix 16	16	A	664	673	Right-handed alpha
Helix 17	17	A	680	687	Right-handed alpha
Helix 18	18	A	689	699	Right-handed 310
Helix 19	19	A	714	728	Right-handed alpha
Helix 20	20	A	745	764	Right-handed alpha
Helix 21	21	B	42	48	Right-handed alpha
Helix 22	22	B	91	95	Right-handed 310
Helix 23	23	B	198	205	Right-handed alpha
Helix 24	24	B	216	218	Right-handed 310
Helix 25	25	B	272	277	Right-handed 310
Helix 26	26	B	288	293	Right-handed alpha
Helix 27	27	B	338	342	Right-handed 310
Helix 28	28	B	422	426	Right-handed 310
Helix 29	29	B	498	506	Right-handed alpha
Helix 30	30	B	563	571	Right-handed alpha
Helix 31	31	B	588	593	Right-handed alpha
Helix 32	32	B	594	596	Right-handed 310
Helix 33	33	B	601	617	Right-handed alpha
Helix 34	34	B	631	642	Right-handed alpha
Helix 35	35	B	659	663	Right-handed 310
Helix 36	36	B	664	673	Right-handed alpha
Helix 37	37	B	680	687	Right-handed alpha
Helix 38	38	B	689	699	Right-handed 310
Helix 39	39	B	714	728	Right-handed alpha
Helix 40	40	B	745	764	Right-handed alpha

There are 24 sheets in PDB entry 2OAE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	65	69	anti-parallel
Strand 3	A	74	78	anti-parallel
Strand 4	A	86	88	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	111	120	anti-parallel
Strand 3	A	126	134	anti-parallel
Strand 4	A	139	140	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	169	173	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	212	214	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	263	270	anti-parallel
Strand 4	A	283	285	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	238	first strand
Strand 2	A	248	253	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	303	first strand
Strand 2	A	308	315	anti-parallel
Strand 3	A	320	329	anti-parallel
Strand 4	A	334	336	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	303	first strand
Strand 2	A	308	315	anti-parallel
Strand 3	A	320	329	anti-parallel
Strand 4	A	344	346	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	368	374	anti-parallel
Strand 3	A	380	386	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	411	first strand
Strand 2	A	415	420	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	444	445	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	468	473	anti-parallel
Strand 3	A	480	485	anti-parallel
Strand 4	A	491	497	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	520	first strand
Strand 2	A	523	531	anti-parallel
Strand 3	A	575	579	anti-parallel
Strand 4	A	541	547	parallel
Strand 5	A	620	630	parallel
Strand 6	A	650	654	parallel
Strand 7	A	700	706	parallel
Strand 8	A	732	736	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	65	69	anti-parallel
Strand 3	B	74	78	anti-parallel
Strand 4	B	86	88	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	120	anti-parallel
Strand 3	B	126	134	anti-parallel
Strand 4	B	139	140	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	169	173	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	212	214	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	263	270	anti-parallel
Strand 4	B	283	285	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	238	first strand
Strand 2	B	248	253	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	303	first strand
Strand 2	B	308	315	anti-parallel
Strand 3	B	320	329	anti-parallel
Strand 4	B	334	336	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	303	first strand
Strand 2	B	308	315	anti-parallel
Strand 3	B	320	329	anti-parallel
Strand 4	B	344	346	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	380	386	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	411	first strand
Strand 2	B	415	420	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	444	445	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	468	473	anti-parallel
Strand 3	B	480	485	anti-parallel
Strand 4	B	491	496	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	520	first strand
Strand 2	B	523	531	anti-parallel
Strand 3	B	575	579	anti-parallel
Strand 4	B	541	547	parallel
Strand 5	B	620	630	parallel
Strand 6	B	650	654	parallel
Strand 7	B	700	706	parallel
Strand 8	B	732	736	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2OAE

Analysis of interatomic Contacts of Structural Units in PDB entry:
2OAE