Analysis of interatomic Contacts of Structural Units in PDB entry:
2OAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OAY entry

There is 1 chain in PDB entry 2OAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 101PRO 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2OAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
112 136Right-handed alpha
Helix 2
2
A
148 162Right-handed alpha
Helix 3
3
A
164 176Right-handed alpha
Helix 4
4
A
183 190Right-handed alpha
Helix 5
5
A
211 223Right-handed alpha
Helix 6
6
A
232 247Right-handed alpha
Helix 7
7
A
344 352Right-handed alpha
Helix 8
8
A
353 366Right-handed alpha
Helix 9
9
A
387 392Right-handed alpha
Helix 10
10
A
393 395Right-handed 310
Helix 11
11
A
398 403Right-handed 310
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There are 3 sheets in PDB entry 2OAY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
466 473anti-parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
331 338anti-parallel
Strand 5
A
320 326anti-parallel
Strand 6
A
298 315anti-parallel
Strand 7
A
287 291anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
466 473anti-parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
331 338anti-parallel
Strand 5
A
320 326anti-parallel
Strand 6
A
298 315anti-parallel
Strand 7
A
369 377anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
196 204parallel
Strand 3
A
265 276anti-parallel
Strand 4
A
431 440anti-parallel
Strand 5
A
419 427anti-parallel
Strand 6
A
380 386anti-parallel
Strand 7
A
446 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il