Analysis of interatomic Contacts of Structural Units in PDB entry:
2OCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OCF entry

There are 4 chains in PDB entry 2OCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 305GLU 380
A
 ALA 382LYS 416
A
 VAL 418ARG 548
D
 SER 2THR 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2OCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
311 322Right-handed alpha
Helix 2
2
A
338 364Right-handed alpha
Helix 3
3
A
366 370Right-handed 310
Helix 4
4
A
371 395Right-handed alpha
Helix 5
5
A
412 416Right-handed alpha
Helix 6
6
A
420 438Right-handed alpha
Helix 7
7
A
441 456Right-handed alpha
Helix 8
8
A
472 493Right-handed alpha
Helix 9
9
A
496 532Right-handed alpha
Helix 10
10
A
537 546Right-handed alpha
Helix 11
11
D
77 84Right-handed alpha
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There are 3 sheets in PDB entry 2OCF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 13first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
56 59anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 51first strand
Strand 2
D
31 38anti-parallel
Strand 3
D
67 75anti-parallel
Strand 4
D
89 93anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il