Analysis of interatomic Contacts of Structural Units in PDB entry:
2OD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OD4 entry

There are 2 chains in PDB entry 2OD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ASP 100
B
 GLY 0ASP 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 2OD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 33Right-handed alpha
Helix 2
2
A
33 42Right-handed alpha
Helix 3
3
A
64 86Right-handed alpha
Helix 4
4
B
19 33Right-handed alpha
Helix 5
5
B
33 42Right-handed alpha
Helix 6
6
B
64 74Right-handed alpha
Helix 7
7
B
75 86Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2OD4.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
45 52anti-parallel
Strand 4
B
87 99anti-parallel
Strand 5
B
9 16anti-parallel
Strand 6
B
55 62anti-parallel
Strand 7
B
45 52anti-parallel
Strand 8
A
87 99anti-parallel
Strand 9
A
9 16anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il