Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ODF entry

There are 8 chains in PDB entry 2ODF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	GLU 257
B	THR 2	GLU 256
C	PHE 7	ILE 255
D	PHE 7	GLU 256
E	ARG 6	GLU 256
F	ARG 6	GLU 256
G	PHE 7	GLU 256
H	ARG 6	GLU 256

There are 93 helices in PDB entry 2ODF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	39	43	Right-handed 310
Helix 2	2	A	48	53	Right-handed alpha
Helix 3	3	A	61	74	Right-handed alpha
Helix 4	4	A	109	112	Right-handed 310
Helix 5	5	A	115	126	Right-handed alpha
Helix 6	6	A	126	144	Right-handed alpha
Helix 7	7	A	177	187	Right-handed alpha
Helix 8	8	A	201	205	Right-handed 310
Helix 9	9	A	207	214	Right-handed alpha
Helix 10	10	A	215	218	Right-handed 310
Helix 11	11	A	229	232	Right-handed 310
Helix 12	12	A	233	257	Right-handed alpha
Helix 13	13	B	2	8	Right-handed alpha
Helix 14	14	B	39	43	Right-handed 310
Helix 15	15	B	48	53	Right-handed alpha
Helix 16	16	B	61	74	Right-handed alpha
Helix 17	17	B	109	112	Right-handed 310
Helix 18	18	B	115	126	Right-handed alpha
Helix 19	19	B	126	144	Right-handed alpha
Helix 20	20	B	177	187	Right-handed alpha
Helix 21	21	B	201	205	Right-handed 310
Helix 22	22	B	207	214	Right-handed alpha
Helix 23	23	B	215	218	Right-handed 310
Helix 24	24	B	229	231	Right-handed 310
Helix 25	25	B	233	256	Right-handed alpha
Helix 26	26	C	39	43	Right-handed 310
Helix 27	27	C	48	53	Right-handed alpha
Helix 28	28	C	61	73	Right-handed alpha
Helix 29	29	C	95	99	Right-handed 310
Helix 30	30	C	109	112	Right-handed 310
Helix 31	31	C	115	126	Right-handed alpha
Helix 32	32	C	126	144	Right-handed alpha
Helix 33	33	C	177	187	Right-handed alpha
Helix 34	34	C	201	205	Right-handed 310
Helix 35	35	C	207	214	Right-handed alpha
Helix 36	36	C	229	232	Right-handed 310
Helix 37	37	C	233	255	Right-handed alpha
Helix 38	38	D	39	43	Right-handed 310
Helix 39	39	D	48	53	Right-handed alpha
Helix 40	40	D	61	74	Right-handed alpha
Helix 41	41	D	109	112	Right-handed 310
Helix 42	42	D	115	126	Right-handed alpha
Helix 43	43	D	126	144	Right-handed alpha
Helix 44	44	D	177	187	Right-handed alpha
Helix 45	45	D	201	205	Right-handed 310
Helix 46	46	D	207	214	Right-handed alpha
Helix 47	47	D	229	232	Right-handed 310
Helix 48	48	D	233	256	Right-handed alpha
Helix 49	49	E	39	43	Right-handed 310
Helix 50	50	E	48	53	Right-handed alpha
Helix 51	51	E	61	73	Right-handed alpha
Helix 52	52	E	109	112	Right-handed 310
Helix 53	53	E	115	126	Right-handed alpha
Helix 54	54	E	126	144	Right-handed alpha
Helix 55	55	E	177	187	Right-handed alpha
Helix 56	56	E	201	205	Right-handed 310
Helix 57	57	E	207	214	Right-handed alpha
Helix 58	58	E	229	232	Right-handed 310
Helix 59	59	E	233	256	Right-handed alpha
Helix 60	60	F	39	43	Right-handed 310
Helix 61	61	F	48	53	Right-handed alpha
Helix 62	62	F	61	73	Right-handed alpha
Helix 63	63	F	109	112	Right-handed 310
Helix 64	64	F	115	126	Right-handed alpha
Helix 65	65	F	126	144	Right-handed alpha
Helix 66	66	F	177	187	Right-handed alpha
Helix 67	67	F	201	205	Right-handed 310
Helix 68	68	F	207	214	Right-handed alpha
Helix 69	69	F	229	232	Right-handed 310
Helix 70	70	F	233	256	Right-handed alpha
Helix 71	71	G	39	43	Right-handed 310
Helix 72	72	G	50	54	Right-handed 310
Helix 73	73	G	61	74	Right-handed alpha
Helix 74	74	G	109	112	Right-handed 310
Helix 75	75	G	115	126	Right-handed alpha
Helix 76	76	G	126	144	Right-handed alpha
Helix 77	77	G	177	187	Right-handed alpha
Helix 78	78	G	201	205	Right-handed 310
Helix 79	79	G	207	214	Right-handed alpha
Helix 80	80	G	229	232	Right-handed 310
Helix 81	81	G	233	256	Right-handed alpha
Helix 82	82	H	39	43	Right-handed 310
Helix 83	83	H	48	53	Right-handed alpha
Helix 84	84	H	61	74	Right-handed alpha
Helix 85	85	H	109	112	Right-handed 310
Helix 86	86	H	115	126	Right-handed alpha
Helix 87	87	H	126	144	Right-handed alpha
Helix 88	88	H	177	187	Right-handed alpha
Helix 89	89	H	201	205	Right-handed 310
Helix 90	90	H	207	214	Right-handed alpha
Helix 91	91	H	215	218	Right-handed 310
Helix 92	92	H	229	232	Right-handed 310
Helix 93	93	H	233	256	Right-handed alpha

There are 23 sheets in PDB entry 2ODF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	A	27	31	parallel
Strand 4	A	149	156	parallel
Strand 5	A	220	227	parallel
Strand 6	A	169	172	anti-parallel
Strand 7	A	194	196	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	106	107	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	163	164	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	27	31	parallel
Strand 4	B	149	156	parallel
Strand 5	B	221	227	parallel
Strand 6	B	169	172	anti-parallel
Strand 7	B	194	196	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	106	107	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	76	80	anti-parallel
Strand 3	C	27	31	parallel
Strand 4	C	149	156	parallel
Strand 5	C	220	227	parallel
Strand 6	C	169	172	anti-parallel
Strand 7	C	194	196	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	106	107	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	163	164	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	76	80	anti-parallel
Strand 3	D	27	31	parallel
Strand 4	D	149	156	parallel
Strand 5	D	220	227	parallel
Strand 6	D	169	172	anti-parallel
Strand 7	D	194	196	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	106	107	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	163	164	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	76	80	anti-parallel
Strand 3	E	27	31	parallel
Strand 4	E	149	156	parallel
Strand 5	E	221	227	parallel
Strand 6	E	169	172	anti-parallel
Strand 7	E	194	196	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	106	107	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	160	first strand
Strand 2	E	163	164	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	19	first strand
Strand 2	F	76	80	anti-parallel
Strand 3	F	27	31	parallel
Strand 4	F	149	156	parallel
Strand 5	F	220	227	parallel
Strand 6	F	169	172	anti-parallel
Strand 7	F	194	196	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	106	107	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	163	164	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	19	first strand
Strand 2	G	76	80	anti-parallel
Strand 3	G	27	31	parallel
Strand 4	G	149	156	parallel
Strand 5	G	221	227	parallel
Strand 6	G	169	172	anti-parallel
Strand 7	G	194	196	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	106	107	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	160	first strand
Strand 2	G	163	164	anti-parallel

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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	19	first strand
Strand 2	H	76	80	anti-parallel
Strand 3	H	27	31	parallel
Strand 4	H	149	156	parallel
Strand 5	H	220	227	parallel
Strand 6	H	169	172	anti-parallel
Strand 7	H	194	196	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	103	first strand
Strand 2	H	106	107	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	160	first strand
Strand 2	H	163	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ODF

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODF