Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ODH entry

There is 1 chain in PDB entry 2ODH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2ODH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 19Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
85 94Right-handed alpha
Helix 4
4
A
149 154Right-handed alpha
Helix 5
5
A
188 194Right-handed alpha
Helix 6
6
A
226 230Right-handed alpha
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There are 5 sheets in PDB entry 2ODH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
50 53parallel
Strand 3
A
57 65anti-parallel
Strand 4
A
156 164parallel
Strand 5
A
173 185anti-parallel
Strand 6
A
22 23anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
50 53parallel
Strand 3
A
57 65anti-parallel
Strand 4
A
156 164parallel
Strand 5
A
173 185anti-parallel
Strand 6
A
231 236anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
107 115anti-parallel
Strand 5
A
95 97anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
214 215anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
124 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il